Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3775g00002 ATGGGCAGAAGCCCTTGTTGTTCAAAGGAAGGCTTGAATCGAGGTGCCTGGACATCCCAGGAAGATAAAATCCTCCGAGAGTATGTTGATGTCCATGGCCCAGGAAAATGGAGCAAGCTTCCTCTAAGAGCAGGATTGAAACGTTGTGGTAAAAGTTGTAGACTTCGATGGTTGAATTATCTGAGACCAGATATCAAGAGAGGCAATATATCCCCAGACGAAAAAGACCTTATCATCAGACTTCACAAACTCCTCGGAAACAGATGGTCTCTAATAGCTGGAAGGCTTCCGGGACGAACTGACAATGAGATAAAGAATTACTGGAACACCAATTTATGTAAAAAAGTTAAGGATCGTCACCTCAGCATTTTTTCTGCACAACCGCCTGAAAAGAACGTGCAGAAAACAAAGCCTCAGGCAATCTCCAAGGTCACCCCCCCTCTCTCTCTCTCTCATGATCTCATAATAAGTTTAAACTCCCATATGGTCCGTATAAAGGCATCTGAATGCTCTAAGTTGTTGTCCGTACATACACTCCCTCTCTCATCAATGCAATTGCAGAGCACGTCTATGGCAGAACTAGAAGCACAAGCAGAGATAGAGATAGAGCCAGAGTCAGAGCCATTGCTTGTGAATCATGCAGACAATAATTCAACCGAAAACAAAATCGAGACTAATGCGTGCGAAGATGAATTTTTCTCATTTCTCAGTGACGGAAAAGAACCTTCAAAGGATTTGCTATTAGATTTTGACATTGGGGAGATTTTCTTACCTGATCTTCTCAACTCGGATTTCTGTGATACATGCGATTTTAGTTACGACGACGACGAGGATTTACTGCCTTTATCCGACCAACCTCTCGTGTCCTCTCTTGAAATTTTCCACGACAAGGACACAGAGATACTTATGTGA 912 0.4287 MGRSPCCSKEGLNRGAWTSQEDKILREYVDVHGPGKWSKLPLRAGLKRCGKSCRLRWLNYLRPDIKRGNISPDEKDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLCKKVKDRHLSIFSAQPPEKNVQKTKPQAISKVTPPLSLSHDLIISLNSHMVRIKASECSKLLSVHTLPLSSMQLQSTSMAELEAQAEIEIEPESEPLLVNHADNNSTENKIETNACEDEFFSFLSDGKEPSKDLLLDFDIGEIFLPDLLNSDFCDTCDFSYDDDEDLLPLSDQPLVSSLEIFHDKDTEILM 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3775g00002 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gabi3775g00002 303 SMART sant 66 114 IPR001005 -
Gabi3775g00002 303 SMART sant 13 63 IPR001005 -
Gabi3775g00002 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Gabi3775g00002 303 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gabi3775g00002 303 CDD SANT 16 61 IPR001005 -
Gabi3775g00002 303 FunFam Transcription factor TT2 70 141 - -
Gabi3775g00002 303 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi3775g00002 303 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 183 - -
Gabi3775g00002 303 Gene3D - 71 143 - -
Gabi3775g00002 303 Gene3D - 14 66 - -
Gabi3775g00002 303 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gabi3775g00002 303 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi3775g00002 303 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi3775g00002 303 CDD SANT 71 112 IPR001005 -
Gabi3775g00002 303 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3775g00002 Gabi-Chr3775 39176 42697 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3775g00002 1 145 MYB Transcription Factor Family AT4G38620 59.184 4.38e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3775g00002 Myb_DNA-binding 3.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3775g00002 K09422 - gmx:100802704 305.064