Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3774g00003 ATGTCAGAGGAAGAAGCACCTTTGGAGGCTAAAAATTCAAACTTGGGCAAAACCCTTTTGTTGGGGTCGCATGCAAGTAGCTCAGGAAAGGTGTATCGCGATATAGTTGGAAGTGCTTATTATGTTGCTCCAGAAGTTCTACACTGCAGATGTGGAAAGGAAATAGATATATGGAGTGCAGGAGTTATATTGTATATCTTACTTAGTGGTGTCCCTCCATTTTGGGCTGGTTATGGATATTATCATTCCCAATCTATGCAACTTTATGATGTCATTGTTGAGAATATGTCTACCGAAGAGATCCAAGGTTTGAAGGCAATGTTTACAAATATGGACACTGACAAAAGTGGTACAATCACCTATGAAGAACTAAAGGCAAGATTGCAAAGACTTGGCTCAAAGCTTATAGAGGCTGAAATGAAACAGCTTATGGAAGCTGCTGATGTAGATGGAAATGACTCAATTGACTACATAGAATTCATCACTGCTACAATGCATAGGCACAAGTTGGAAAAAGATGACCAGCTTTTCAAGGCCTTCCAATAA 546 0.3956 MSEEEAPLEAKNSNLGKTLLLGSHASSSGKVYRDIVGSAYYVAPEVLHCRCGKEIDIWSAGVILYILLSGVPPFWAGYGYYHSQSMQLYDVIVENMSTEEIQGLKAMFTNMDTDKSGTITYEELKARLQRLGSKLIEAEMKQLMEAADVDGNDSIDYIEFITATMHRHKLEKDDQLFKAFQ 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3774g00003 181 Coils Coil 121 141 - -
Gabi3774g00003 181 ProSiteProfiles EF-hand calcium-binding domain profile. 99 134 IPR002048 GO:0005509
Gabi3774g00003 181 Gene3D - 98 181 - -
Gabi3774g00003 181 ProSitePatterns EF-hand calcium-binding domain. 148 160 IPR018247 -
Gabi3774g00003 181 FunFam Calmodulin-2 A 93 181 - -
Gabi3774g00003 181 SUPERFAMILY EF-hand 96 181 IPR011992 -
Gabi3774g00003 181 Pfam Protein kinase domain 28 92 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3774g00003 181 ProSitePatterns EF-hand calcium-binding domain. 112 124 IPR018247 -
Gabi3774g00003 181 SUPERFAMILY Protein kinase-like (PK-like) 16 95 IPR011009 -
Gabi3774g00003 181 Pfam EF-hand domain pair 104 164 IPR002048 GO:0005509
Gabi3774g00003 181 ProSiteProfiles Protein kinase domain profile. 1 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3774g00003 181 SMART efh_1 139 167 IPR002048 GO:0005509
Gabi3774g00003 181 SMART efh_1 103 131 IPR002048 GO:0005509
Gabi3774g00003 181 ProSiteProfiles EF-hand calcium-binding domain profile. 135 170 IPR002048 GO:0005509
Gabi3774g00003 181 Gene3D Transferase(Phosphotransferase) domain 1 7 97 - -
Gabi3774g00003 181 CDD EFh 104 163 IPR002048 GO:0005509
Gabi3774g00003 181 PANTHER SERINE/THREONINE-PROTEIN KINASE 30 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3774g00003 Gabi-Chr3774 51828 53883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3774g00003 91 181 EF-hand Containing Proteins AT3G20410 78.022 8.87e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi3774g00003 EF-hand_7 7.4e-10 CL0220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3774g00003 K13412 - gmx:547888 163.31