Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3773g00001 ATGGCTCTCCTAACTTCCTTGCCTGAAAACTCCAACACCAAAAAACAACTCCCCAAACGCAAGCGAAAGCAACAGAAGCAGGAGCAAAAACAGAAGCAGAAACCACCCTCTTCATGGGATCAAATCAAAAGCCTCATAACCTGCAAACAGATCGAAGGGTCCAGAGTGCATGACCCATCCAAGGTAGCTGGATACTCCAAGCTAGGATCTTCTTGCAGTTCCATATGTAGCTTCAGAGATGTTGTTCATGGCAACTCTCGAGTTGTTCACAGGGGTGATAACTCTTCCCCTGAGAGTAGCACCCTCGGTCAAGAAACTAGCCTACTCAAAAGAAAACCTGTCACCGGTAAATCCAACGGTGGAGCAACCTACACGTCATCATCTTCCAGAGGAATGCAATTCAGGAAATTATCTGGCTGTTATGAATGTCACATGATCATAGACCCTAGCAGGCTACCAATTCCGAGGAGCACTGTTTGTGCTTGCTCTCAGTGTGGAGAGGTCTTCCCTAAGATGGAAAGCTTGGAGCTTCATCAAGCTGTTCGTCATGCTGTTTCGGAGCTGGGTCAGGAGGATTCGGGTCGGAACATAGTGGAGATAATCTTCAAATCGAGTTGGTTGAAGAAGGACAACTCCATATGCAAGATCGAACGGATACTGAAAGTGCACAACACCCAACGCACCATCCAACGGTTCGAGGAGTGCAGGGACACGGTAAAGAACCGTGCACTCAACAGCAGCAAGAAAAACCCCAGGTGCGCAGCCGATGGCAACGAGCTCCTGCGGTTCTACTGCACCACCTTAACATGCGCACTGGGCGCACGTGGCTCTTCCACCTTGTGTGCCGCCGTACCCGGCTGCGGTGTTTGCACCGTCATCAGGCACGGTTTTCAAGGCAAGTCCGGCGGCGGCGGGGAGCATGGCAAGGGGGTGAGGACCACCGCCAGCAGCGGTAGGGCTCACGACTCGGTGCAGTGCGGTGGCGAGGGTAGCAGCAGAAGGGCGATGCTGGTGTGTCGTGTGATTGCGGGGAGAGTGAAGCGCGTGGCGGAGGATGCGTCGCCGTCTCCGTCGCCGTCGGAGGAGGAAACTGTGTCGGCTGGTTCCTATGATTCTGTAGCCGGTTACGCAGGAATCTACTCGAATCTCGAAGAGTTGATTGTTTTCAATCCAAGGGCTATCCTTCCTTGTTTCGTAGTAATTTACAAGGTGCATGCTGATTTTTAA 1227 0.5216 MALLTSLPENSNTKKQLPKRKRKQQKQEQKQKQKPPSSWDQIKSLITCKQIEGSRVHDPSKVAGYSKLGSSCSSICSFRDVVHGNSRVVHRGDNSSPESSTLGQETSLLKRKPVTGKSNGGATYTSSSSRGMQFRKLSGCYECHMIIDPSRLPIPRSTVCACSQCGEVFPKMESLELHQAVRHAVSELGQEDSGRNIVEIIFKSSWLKKDNSICKIERILKVHNTQRTIQRFEECRDTVKNRALNSSKKNPRCAADGNELLRFYCTTLTCALGARGSSTLCAAVPGCGVCTVIRHGFQGKSGGGGEHGKGVRTTASSGRAHDSVQCGGEGSSRRAMLVCRVIAGRVKRVAEDASPSPSPSEEETVSAGSYDSVAGYAGIYSNLEELIVFNPRAILPCFVVIYKVHADF 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3773g00001 408 MobiDBLite consensus disorder prediction 88 128 - -
Gabi3773g00001 408 Gene3D - 184 404 - -
Gabi3773g00001 408 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 37 402 - -
Gabi3773g00001 408 FunFam C2H2-like zinc finger protein 184 403 - -
Gabi3773g00001 408 SUPERFAMILY ADP-ribosylation 185 404 - -
Gabi3773g00001 408 ProSitePatterns Zinc finger C2H2 type domain signature. 160 183 IPR013087 -
Gabi3773g00001 408 MobiDBLite consensus disorder prediction 1 39 - -
Gabi3773g00001 408 MobiDBLite consensus disorder prediction 89 128 - -
Gabi3773g00001 408 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 188 IPR013087 -
Gabi3773g00001 408 MobiDBLite consensus disorder prediction 301 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3773g00001 Gabi-Chr3773 12008 15043 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3773g00001 1 404 C2H2 Transcription Factor Family AT1G75710 63.931 9.63e-180 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3773g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3773g00001 - - gmx:100816726 610.912