Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3771g00001 ATGGTGTTGGTTGATGAAAAGAACAGGGATAGGGTGGCTAAGAAGGAGGTGGTGGAGCTTCCACAAAATGATCAAGCTGTAACTGTGGCATTTCATGGGGAGGAACTGAACGAGGATGTACCTCTTGCCCACTTGTCTAAGAAGTCTCCTTTAACCATGGATAAACAAAACAAGGCGGTGGAGAATAAAAACAACTCCATTAAGGTTGCAACAGATGGAACATCCTCTCACGGTGCAGCATTGATTCGAGCAGAGGAGATGCAGTCAAATTTGGAATCGGAATTCCCTAGTTTTGTGAAGTCCTTAGTCAGATCACATGTTGCTAGTTGTTTTTGGATGGGGCTGCCTGTAGCGTTCTGTAGAAGACACTTACCGGATAAGGATACAACAATCACTTTGGAAGATGAATCTGGTAAAGAATACAAAACGAAATACATTGCTTGTAAGACAGGATTGAGTGCTGGTTGGAGACAGTTTTCTGCTGTGCACAAATTGCAGGAGGGTGATGTGGTGGTCTTCCAATTAGTTGAACCTACCAAATTTAAGGTTTGTATAATAAGAGCTAATAATTCGAGGGAACTAGATGGGGCCCTTTCCCTTCTGAATCTAGACAGTAACATAAAACAAAAAGTGGGAGGCAAAGATAATGCAAATACTAATTCAGTAGCATGTAATAGCTCAAAGAGAAAACATGGTAAACCTGTCCCTCAAGACATCCAAAAGAAAAAGAAAACCGGTGTGCCAAGATTAGGGCCTACGCCTAGGCAGTCTGCAGAACAATCAGAAAATGATAGCGAGGAAGCTCTCTCAGAAGTACTGGAGGGCTTTAAAATGCTTGAATTCAAAAATGTAAAACGTTTTGAAGATTTTAGCATCATAGTCGATGGAATGCTAATAGATGCTGAACTCTCAACTGAAGTTCGAAACAAGTACTACAAGCTCTGCTACAGTCAGCATGCTTTTCTTCATGACAATCTCATCAAGGGCTTGAACTATAAGCTGATTGCTGGAATTATATCTGAAACTGTCAACATTGCTGATGCCATAAAAATTAGTGTGATATCTACCCCACGTGTTGAATTTGCTAGTTGGGATAAAACTTTGCTTGCTTTTGAGCATTTGGGCATGAATGTTGAATTTTTAAGAATAAGATTGCGCCGGCTTGTAAGCATTGCTTATGAAACAGATGATGCCTCAGAGACCAAAAGATACTTGGCATATAGAAGTGAACATAGTCGAGCTGATGATGAAATAAAGAACATGGAAACTAAGCTTGAAGAATTGAAGGGAGCCTGTAATGGTTTTGGTGCTTATCTTGAGAGCTTGAGGTGCAAAGCAGAAAGCTATCAGCTCAAGTTTCAGAAAGAGGTCACTTCTCTTTGGTGA 1386 0.4062 MVLVDEKNRDRVAKKEVVELPQNDQAVTVAFHGEELNEDVPLAHLSKKSPLTMDKQNKAVENKNNSIKVATDGTSSHGAALIRAEEMQSNLESEFPSFVKSLVRSHVASCFWMGLPVAFCRRHLPDKDTTITLEDESGKEYKTKYIACKTGLSAGWRQFSAVHKLQEGDVVVFQLVEPTKFKVCIIRANNSRELDGALSLLNLDSNIKQKVGGKDNANTNSVACNSSKRKHGKPVPQDIQKKKKTGVPRLGPTPRQSAEQSENDSEEALSEVLEGFKMLEFKNVKRFEDFSIIVDGMLIDAELSTEVRNKYYKLCYSQHAFLHDNLIKGLNYKLIAGIISETVNIADAIKISVISTPRVEFASWDKTLLAFEHLGMNVEFLRIRLRRLVSIAYETDDASETKRYLAYRSEHSRADDEIKNMETKLEELKGACNGFGAYLESLRCKAESYQLKFQKEVTSLW 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3771g00001 461 ProSiteProfiles B3 DNA-binding domain profile. 98 189 IPR003340 GO:0003677
Gabi3771g00001 461 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 58 191 IPR044837 -
Gabi3771g00001 461 MobiDBLite consensus disorder prediction 212 227 - -
Gabi3771g00001 461 Pfam B3 DNA binding domain 98 188 IPR003340 GO:0003677
Gabi3771g00001 461 Gene3D - 80 191 IPR015300 -
Gabi3771g00001 461 SMART B3_2 98 189 IPR003340 GO:0003677
Gabi3771g00001 461 Coils Coil 411 431 - -
Gabi3771g00001 461 MobiDBLite consensus disorder prediction 212 264 - -
Gabi3771g00001 461 CDD B3_DNA 96 187 IPR003340 GO:0003677
Gabi3771g00001 461 MobiDBLite consensus disorder prediction 231 245 - -
Gabi3771g00001 461 SUPERFAMILY DNA-binding pseudobarrel domain 91 189 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3771g00001 Gabi-Chr3771 13931 18038 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3771g00001 80 204 B3 DNA Binding Superfamily AT3G19184 48.000 4.49e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi3771g00001 B3 7.4e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3771g00001 - - gmx:100819237 691.419