Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi376g00027 ATGGTAAGGGGAGGAAAGGTTAGTGGCAAACGCACTTTTAGAAAAAAGGTTCGGTCAAAGGAGGGCGGTTCTGATGATTCGGATGAGGACTATGTGGTTTCAGATGAAGATAGAGATGTATCTGACTATTATTGCTCCTCGTTAGATGGATGTGCATCAGAGGAGAGTTTTGAAAATTTTATGGAGGAGGAGGAGGATGAAGAGGAGGAGGAGGAGGAGGAATTTCAAGGAGTGAGTAATTTCAATAGATCCAAGGTGAAAAATGACATTTGTGGTCGGCGGAGAAATGCAAGTAAAAACTCAAGAAAGGGGGGAAGGATTACGTATGCAGAACAAGAAGAAGGGGAGGAGAAAAAGGAAGACAAAGAAGCCAGGGGGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGAAATTCATGGAGTGAGAAATTTCAATAGGTCAAAGGCCAAAAATGGTGTTTGGGGTAAGCAAAAAAATGCAAGTAAAACCACACGAAAGAGGGGAAGGATAACACATGCAGAACAACTAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGATGGAAGAGGAGGAGGAGGTGAAGGAGCAGGAAGAGAAGGTGGAGAGAGATGGAGAATGGGAAGGGGAGGAAGAGCAGGGAGATGGAGATGAAGAGGATGAGGATGAGGATTTTGACTTTGACGACGAGGATGATGAATTTACGCCAGAGGAAGAAGATTATTCAGATGAGGAAGAAGAATTGAGGGGGAGAAAGAAGAAAAATAATGGCATGAAAATGGGCAAGAAGGTTTTACAGAAAAGGGCCTCTGTGGCTTCTACCAGAGGTCGAAAAAGGCGGAGTTCTAGAGCATCAAAGAAACCCTTGAAAAACAAAAAAAGAAAGAATGGAGGGTTAAGGAGGAAAGTAAGATATGACAATGAAGATGGTTTTATAGATAGTTGCCCAGCCATCAAGACAACGAGTAGGAAAAAAGATGCCCCGAAGAGGAGAAGGCTGCTTCTCGCGGATTCAGATTCAGAATTTGTGTCTTCTGGATCATCAGATTTTGAGTATACCATATCTGAAGAAGAGAGAGAACAGATGAGAGAAGCCAAGAAATTGTGTGGAAGCTTGCGAAATAACTTGAGGAGTTCATCCTTCCTAACAAAAAATGAAGAGGTTGGAGTCCATGAAGATCTACATCAGCAGAGGAAGCCTCCAGGTCGGAAGGGTAAGGAAAAGATAGAAGAACCACAAGGTAGAAAGGGTAAAGAAAAGGTGGAGGGTTTAAAAAGTGAGGTGGGAAAGCAGGTTTGCGGGGTTTGTCTGTCTGAGGAAGATAAAAGAAGAGTAAGGGGGGTACTAAATTGTTGCACTCACTATTTCTGTTTTGCTTGCATTATGGAGTGGGCGAAGGTGGAATCTCGCTGCCCTTTGTGTAAGCAGAGATTCAAAACAATCAGTAAGCCTGCACGATCATCGACAGGGATTGATTTAAGAGAAGTGGTGATACAAGTTCCTGAACGTGACCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTACATTGATCCATATGAGTATGTTATTTGTTCAGAGTGTCATCAAGGTGGAGATGATGGCCTCATGTTGCTCTGTGATATCTGCGATTCCCCAGCACACACATATTGCGTTGGTTTGGGGCGGGAAGTTCCTGAAGGTAATTGGTATTGTGATGGTTGTAGACCAGTTGCTTTGGGATCTTCAAATTCCCAAGATCAAGAACGTGTTGCTGATCCAAGGATAACAACCCAGAGCATGCCTGTTAGACCACCCCCTCTTCAACATGTACGAGAAAGTATAGACCTCAACTTGACTTCTTCACCCCGCGCAGCTTTTAATCAAGGATTTGGGCATCTTTCATCTTCTAGGTTTACTGGCAGAAGTGTCGAAGGAGCTTCTCCAATACCTGGAGGGGCACCAACTTTATCAGAGAGACGTTGGATACACCGTCAAATTCATCAGCTACTTTCAATAGATAGGATGACCTCTGCAACTGGCAGAACTAATGGTATTTCAGCTACCAGTTCAACTAGTAACTTACATAGCTCTCAAATTGATCAAAGTAGGGAAACAGCCACTCAGTATGCAAGGACACAGGATGTGGGAACATCATACCATACATTTTTTGAGGAGAGATTGTGCAACAATAGCTCTCCATTAATGCAGAATGGGGCATTATGGCCTGGACTTATGGGAACACCCCCAGTACCAGATTGTGAACAAGTCCATCAGTTCAGCAGATCAAACGTTGTCACTGATGGTAGCTTGTTCCCTGCTGTCAGAGAAGAGAGTAACTTTCACATTGCAATGGAACAGTTGCAGTCGATGGTTAAAGACCACCTGAAGAATTTGTCTCAAAATATTGATTTAGGCCACAGTACTTCCAAGGACATTACAAGGAGTTCTATGCACACCATACTAGCAGCTTGTGGTCTTGAGCACAAGAAGAGTGAGGAGATGTGGTGA 2499 0.4414 MVRGGKVSGKRTFRKKVRSKEGGSDDSDEDYVVSDEDRDVSDYYCSSLDGCASEESFENFMEEEEDEEEEEEEEFQGVSNFNRSKVKNDICGRRRNASKNSRKGGRITYAEQEEGEEKKEDKEARGEEEEEEEEEEEEEIHGVRNFNRSKAKNGVWGKQKNASKTTRKRGRITHAEQLEEEEEEEEEEEMEEEEEVKEQEEKVERDGEWEGEEEQGDGDEEDEDEDFDFDDEDDEFTPEEEDYSDEEEELRGRKKKNNGMKMGKKVLQKRASVASTRGRKRRSSRASKKPLKNKKRKNGGLRRKVRYDNEDGFIDSCPAIKTTSRKKDAPKRRRLLLADSDSEFVSSGSSDFEYTISEEEREQMREAKKLCGSLRNNLRSSSFLTKNEEVGVHEDLHQQRKPPGRKGKEKIEEPQGRKGKEKVEGLKSEVGKQVCGVCLSEEDKRRVRGVLNCCTHYFCFACIMEWAKVESRCPLCKQRFKTISKPARSSTGIDLREVVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSNSQDQERVADPRITTQSMPVRPPPLQHVRESIDLNLTSSPRAAFNQGFGHLSSSRFTGRSVEGASPIPGGAPTLSERRWIHRQIHQLLSIDRMTSATGRTNGISATSSTSNLHSSQIDQSRETATQYARTQDVGTSYHTFFEERLCNNSSPLMQNGALWPGLMGTPPVPDCEQVHQFSRSNVVTDGSLFPAVREESNFHIAMEQLQSMVKDHLKNLSQNIDLGHSTSKDITRSSMHTILAACGLEHKKSEEMW 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi376g00027 832 ProSiteProfiles Zinc finger RING-type profile. 435 477 IPR001841 -
Gabi376g00027 832 MobiDBLite consensus disorder prediction 677 696 - -
Gabi376g00027 832 SMART ring_2 435 476 IPR001841 -
Gabi376g00027 832 MobiDBLite consensus disorder prediction 57 75 - -
Gabi376g00027 832 MobiDBLite consensus disorder prediction 389 423 - -
Gabi376g00027 832 PANTHER F18C1.6 PROTEIN 176 829 - -
Gabi376g00027 832 MobiDBLite consensus disorder prediction 1 39 - -
Gabi376g00027 832 SUPERFAMILY FYVE/PHD zinc finger 498 573 IPR011011 -
Gabi376g00027 832 Coils Coil 357 377 - -
Gabi376g00027 832 CDD RING-HC_Topors 433 480 - -
Gabi376g00027 832 SMART PHD_3 527 572 IPR001965 -
Gabi376g00027 832 MobiDBLite consensus disorder prediction 178 246 - -
Gabi376g00027 832 Pfam Ring finger domain 434 477 IPR001841 -
Gabi376g00027 832 ProSiteProfiles Zinc finger PHD-type profile. 525 574 IPR019787 -
Gabi376g00027 832 Coils Coil 171 206 - -
Gabi376g00027 832 MobiDBLite consensus disorder prediction 106 125 - -
Gabi376g00027 832 Coils Coil 110 139 - -
Gabi376g00027 832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 413 498 IPR013083 -
Gabi376g00027 832 MobiDBLite consensus disorder prediction 57 333 - -
Gabi376g00027 832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 499 575 IPR013083 -
Gabi376g00027 832 ProSitePatterns Zinc finger RING-type signature. 454 463 IPR017907 -
Gabi376g00027 832 MobiDBLite consensus disorder prediction 274 302 - -
Gabi376g00027 832 SUPERFAMILY RING/U-box 434 483 - -
Gabi376g00027 832 Coils Coil 54 74 - -
Gabi376g00027 832 Pfam PHD-finger 527 573 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi376g00027 Gabi-Chr376 148184 152167 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi376g00027 522 571 C2H2 Transcription Factor Family AT3G01460 46.154 1.81e-08 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi376g00027 PHD 4.2e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi376g00027 - - gmx:100791422 1061.21