Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi376g00025 ATGGTAAGGGGAGGAAAGGTTAGTGGCAAACGCACTTTTAGAAAAAAGGTTCGGTCAAAGGAGGGCGGTTCTGATGATTCGGATGAGGACTATGTGGTTTCAGATGAAGATAGAGATGTATCTGACTATTATTGCTCCTCGTTAGATGGATGTGCATCAGAGGAGAGTTTTGAAAATTTTATGGAGGAGGAGGAGGATGAAGAGGAGGAGGAGGAGGAGGAATTTCAAGGAGTGAGTAATTTCAATAGATCCAAGGTGAAAAATGACATTTGTGGTCGGCGGAGAAATGCAAGTAAAAACTCAAGAAAGGGGGGAAGGATTACGTATGCAGAACAAGAAGAAGGGGAGGAGAAAAAGGAAGACAAAGAAGCCAGGGGGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGAAATTCATGGAGTGAGAAATTTCAATAGGATAACACATGCAGAACAACTAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGATGGAAGAGGAGGAGGAGGTGAAGGAGCAGGAAGAGAAGGTGGAGAGAGATGGAGAATGGGAAGGGGAGGAAGAGCAGGGAGATGGAGATGAAGAGGATGAGGATGAGGATTTTGACTTTGACGACGAGGATGATGAATTTACGCCAGAGGAAGAAGATTATTCAGATGAGGAAGAAGAATTGAGGGGGAGAAAGAAGAAAAATAATGGCATGAAAATGGGCAAGAAGGTTTTACAGAAAAGGGCCTCTGTGGCTTCTACCAGAGGTCGAAAAAGGCGGAGTTCTAGAGCATCAAAGAAACCCTTGAAAAACAAAAAAAGAAAGAATGGAGGGTTAAGGAGGAAAGTAAGATATGACAATGAAGATGGTTTTATAGATAGTTGCCCAGCCATCAAGACAACGAGTAGGAAAAAAGATGCCCCGAAGAGGAGAAGGCTGCTTCTCGCGGATTCAGATTCAGAATTTGTGTCTTCTGGATCATCAGATTTTGAGTATACCATATCTGAAGAAGAGAGAGAACAGATGAGAGAAGCCAAGAAATTGTGTGGAAGCTTGCGAAATAACTTGAGGAGTTCATCCTTCCTAACAAAAAATGAAGAGGTTGGAGTCCATGAAGATCTACATCAGCAGAGGAAGCCTCCAGGTCGGAAGGGTAAGGAAAAGATAGAAGAACCACAAGGTAGAAAGGGTAAAGAAAAGGTGGAGGGTTTAAAAAGTGAGGTGGGAAAGCAGGTTTGCGGGGTTTGTCTGTCTGAGGAAGATAAAAGAAGAGTAAGGGGGGTACTAAATTGTTGCACTCACTATTTCTGTTTTGCTTGCATTATGGAGTGGGCGAAGGTGGAATCTCGCTGCCCTTTGTGTAAGCAGAGATTCAAAACAATCAGTAAGCCTGCACGATCATCGACAGGGATTGATTTAAGAGAAGTGGTGATACAAGTTCCTGAACGTGACCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTACATTGATCCATATGAGTATGTTATTTGTTCAGAGTGTCATCAAGGTGGAGATGATGGCCTCATGTTGCTCTGTGATATCTGCGATTCCCCAGCACACACATATTGCGTTGGTTTGGGGCGGGAAGTTCCTGAAGGTAATTGGTATTGTGATGGTTGTAGACCAGTTGCTTTGGGATCTTCAAATTCCCAAGATCAAGAACGTGTTGCTGATCCAAGGATAACAACCCAGAGCATGCCTGTTAGACCACCCCCTCTTCAACATGTACGAGAAAGTATAGACCTCAACTTGACTTCTTCACCCCGCGCAGCTTTTAATCAAGGATTTGGGCATCTTTCATCTTCTAGGTTTACTGGCAGAAGTGTCGAAGGAGCTTCTCCAATACCTGGAGGGGCACCAACTTTATCAGAGAGACGTTGGATACACCGTCAAATTCATCAGCTACTTTCAATAGATAGGATGACCTCTGCAACTGGCAGAACTAATGGTATTTCAGCTACCAGTTCAACTAGTAACTTACATAGCTCTCAAATTGATCAAAGTAGGGAAACAGCCACTCAGTATGCAAGGACACAGGATGTGGGAACATCATACCATACATTTTTTGAGGAGAGATTGTGCAACAATAGCTCTCCATTAATGCAGAATGGGGCATTATGGCCTGGACTTATGGGAACACCCCCAGTACCAGATTGTGAACAAGTCCATCAGTTCAGCAGATCAAACGTTGTCACTGATGGTAGCTTGTTCCCTGCTGTCAGAGAAGAGAGTAACTTTCACATTGCAATGGAACAGTTGCAGTCGATGGTTAAAGACCACCTGAAGAATTTGTCTCAAAATATTGATTTAGGCCACAGTACTTCCAAGGACATTACAAGGAGTTCTATGCACACCATACTAGCAGCTTGTGGTCTTGAGCACAAGAAGAGTGAGGTTTGCACTGTGCCTCCCCCATCCGTGTGTCCGCACATTGAACTAATGGCTGGTTGGCAAACGAGTCTGATTAAAGGTTGCTGCTCATCTTGCTTTGATTCTTTTGTAGGAGATGTGGTGAAGAGGATTTTGGACACAAGAATCTCGTCACAGTGGTTACGATTAGGTCTTTAG 2592 0.4429 MVRGGKVSGKRTFRKKVRSKEGGSDDSDEDYVVSDEDRDVSDYYCSSLDGCASEESFENFMEEEEDEEEEEEEEFQGVSNFNRSKVKNDICGRRRNASKNSRKGGRITYAEQEEGEEKKEDKEARGEEEEEEEEEEEEEIHGVRNFNRITHAEQLEEEEEEEEEEEMEEEEEVKEQEEKVERDGEWEGEEEQGDGDEEDEDEDFDFDDEDDEFTPEEEDYSDEEEELRGRKKKNNGMKMGKKVLQKRASVASTRGRKRRSSRASKKPLKNKKRKNGGLRRKVRYDNEDGFIDSCPAIKTTSRKKDAPKRRRLLLADSDSEFVSSGSSDFEYTISEEEREQMREAKKLCGSLRNNLRSSSFLTKNEEVGVHEDLHQQRKPPGRKGKEKIEEPQGRKGKEKVEGLKSEVGKQVCGVCLSEEDKRRVRGVLNCCTHYFCFACIMEWAKVESRCPLCKQRFKTISKPARSSTGIDLREVVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSNSQDQERVADPRITTQSMPVRPPPLQHVRESIDLNLTSSPRAAFNQGFGHLSSSRFTGRSVEGASPIPGGAPTLSERRWIHRQIHQLLSIDRMTSATGRTNGISATSSTSNLHSSQIDQSRETATQYARTQDVGTSYHTFFEERLCNNSSPLMQNGALWPGLMGTPPVPDCEQVHQFSRSNVVTDGSLFPAVREESNFHIAMEQLQSMVKDHLKNLSQNIDLGHSTSKDITRSSMHTILAACGLEHKKSEVCTVPPPSVCPHIELMAGWQTSLIKGCCSSCFDSFVGDVVKRILDTRISSQWLRLGL 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi376g00025 863 MobiDBLite consensus disorder prediction 57 75 - -
Gabi376g00025 863 MobiDBLite consensus disorder prediction 1 39 - -
Gabi376g00025 863 MobiDBLite consensus disorder prediction 251 279 - -
Gabi376g00025 863 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 476 552 IPR013083 -
Gabi376g00025 863 MobiDBLite consensus disorder prediction 366 400 - -
Gabi376g00025 863 MobiDBLite consensus disorder prediction 654 673 - -
Gabi376g00025 863 Pfam PHD-finger 504 550 IPR019787 -
Gabi376g00025 863 ProSitePatterns Zinc finger RING-type signature. 431 440 IPR017907 -
Gabi376g00025 863 MobiDBLite consensus disorder prediction 155 223 - -
Gabi376g00025 863 MobiDBLite consensus disorder prediction 57 310 - -
Gabi376g00025 863 SUPERFAMILY RING/U-box 411 460 - -
Gabi376g00025 863 ProSiteProfiles Zinc finger PHD-type profile. 502 551 IPR019787 -
Gabi376g00025 863 Coils Coil 334 354 - -
Gabi376g00025 863 SUPERFAMILY FYVE/PHD zinc finger 475 550 IPR011011 -
Gabi376g00025 863 ProSiteProfiles Zinc finger RING-type profile. 412 454 IPR001841 -
Gabi376g00025 863 SMART ring_2 412 453 IPR001841 -
Gabi376g00025 863 Pfam Ring finger domain 411 454 IPR001841 -
Gabi376g00025 863 Coils Coil 148 183 - -
Gabi376g00025 863 PANTHER F18C1.6 PROTEIN 157 852 - -
Gabi376g00025 863 MobiDBLite consensus disorder prediction 106 125 - -
Gabi376g00025 863 MobiDBLite consensus disorder prediction 140 154 - -
Gabi376g00025 863 Coils Coil 110 139 - -
Gabi376g00025 863 SMART PHD_3 504 549 IPR001965 -
Gabi376g00025 863 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 390 475 IPR013083 -
Gabi376g00025 863 CDD RING-HC_Topors 410 457 - -
Gabi376g00025 863 Coils Coil 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi376g00025 Gabi-Chr376 148169 152167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi376g00025 499 548 C2H2 Transcription Factor Family AT3G01460 46.154 2.89e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi376g00025 PHD 4.4e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi376g00025 - - gmx:100791422 1050.81