Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi376g00022 ATGGCAGAGTTGGCCAAGACTCATGCAAAGGCTTTAATGCCATCATTTGGAGATGGTAAGGAAGACCAACATGCTATTGAGTCGCTAACTCACGAGATAACTGACTTAATAAAGAGATCAGAGAGGAGATTGCGGAGACTATCTGCTACTGGGCCATCTGAGGATTCCAATGTCATGAAAAATGTGCAGCGTTCTCTTGCTACTGACCTTCAGAATCTCTCTGTAGAGCTCCGCAAGAAACAATCAACTTATTTGAAGCGCCTCAGGCAGCAAAAAGAGGGTCAAGATGGGGTTGATCTAGAGATGAACATAAATGGACGTAAATCCAGATTTGAAGATGATGACTTGGATAGTATGGTATTTAATGAGCATCAGATGGCTAAGCTGAAAAAAAGTGAAGCATTCACAGTAGAAAGAGAAAAGGAGATCCAACAGGTTGTGGAATCTGTGAACGAGCTTGCTCAGATTATGAAGGATTTATCAGTACTAGTCATAGACCAGGGAACCATTGTTGACAGAATAGACTACAACATTCAGAATGTCGCTACCACAGTTGAGGATGGCCTTAAACAGCTGCAGAAGGCAGAGAGAACTCAGAAAAAGGGGGGCATTGTAACGTGTGCTACGGTGCTTCTTATCATGTGCTTCGTTATGTTGGTTCTCTTAATCATTAAGGAAATTATTTTGTGA 690 0.4188 MAELAKTHAKALMPSFGDGKEDQHAIESLTHEITDLIKRSERRLRRLSATGPSEDSNVMKNVQRSLATDLQNLSVELRKKQSTYLKRLRQQKEGQDGVDLEMNINGRKSRFEDDDLDSMVFNEHQMAKLKKSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGIVTCATVLLIMCFVMLVLLIIKEIIL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi376g00022 229 CDD SNARE_syntaxin16 138 194 - -
Gabi376g00022 229 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 133 195 IPR000727 -
Gabi376g00022 229 Pfam SNARE domain 169 221 IPR000727 -
Gabi376g00022 229 SUPERFAMILY t-snare proteins 2 188 IPR010989 GO:0016020|GO:0016192
Gabi376g00022 229 SMART tSNARE_6 128 195 IPR000727 -
Gabi376g00022 229 PANTHER SYNTAXIN 10 215 IPR045242 -
Gabi376g00022 229 ProSitePatterns Syntaxin / epimorphin family signature. 139 178 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gabi376g00022 229 FunFam Syntaxin-43 1 187 - -
Gabi376g00022 229 Gene3D - 1 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi376g00022 Gabi-Chr376 135877 141297 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi376g00022 1 229 SNARE and Associated Proteins AT5G26980 78.603 3.77e-127 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi376g00022 K08489 - gmx:100796741 408.683