Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi376g00020 ATGGCGTCGAGGAATCGCACTTTGCTGTTCAGAAAGCATAGAGATGCATTGAAGAGTGTTCGGGTTCCGTCCACCTCTTCGCCGTCGTCAACCACCACTTCCCGCGGTGGCCCCGTCATCGAATTGGTCAGCACCTCCCTTCTCAATCCAAGTCGCTCTTACGCTCCGCTTAGTACCGACGATCCCGGTAATTCAAGTAAGGGTCTAAATCCAATTACTGTGGGGCTACCTCCAGCGTGGGTGGATGTGTCTGAAGAAATATCAGCAAATGTGCAACGTGCACGCACAAAGATGGCAGAGTTGGCCAAGACTCATGCAAAGGCTTTAATGCCATCATTTGGAGATGGTAAGGAAGACCAACATGCTATTGAGTCGCTAACTCACGAGATAACTGACTTAATAAAGAGATCAGAGAGGAGATTGCGGAGACTATCTGCTACTGGGCCATCTGAGGATTCCAATGTCATGAAAAATGTGCAGCGTTCTCTTGCTACTGACCTTCAGAATCTCTCTGTAGAGCTCCGCAAGAAACAATCAACTTATTTGAAGCGCCTCAGGCAGCAAAAAGAGGGTCAAGATGGGGTTGATCTAGAGATGAACATAAATGGACGTAAATCCAGATTTGAAGATGATGACTTGGATAGTATGGTATTTAATGAGCATCAGATGGCTAAGCTGAAAAAAAGTGAAGCATTCACAGTAGAAAGAGAAAAGGAGATCCAACAGGTTGTGGAATCTGTGAACGAGCTTGCTCAGATTATGAAGGATTTATCAGTACTAGTCATAGACCAGGGAACCATTGTTGACAGAATAGACTACAACATTCAGAATGTCGCTACCACAGTTGAGGATGGCCTTAAACAGCTGCAGAAGGCAGAGAGAACTCAGAAAAAGGGGGGCATTGTAACGTGTGCTACGGTGCTTCTTATCATGTGCTTCGTTATGTTGGTTCTCTTAATCATTAAGGAAATTATTTTGTGA 981 0.4506 MASRNRTLLFRKHRDALKSVRVPSTSSPSSTTTSRGGPVIELVSTSLLNPSRSYAPLSTDDPGNSSKGLNPITVGLPPAWVDVSEEISANVQRARTKMAELAKTHAKALMPSFGDGKEDQHAIESLTHEITDLIKRSERRLRRLSATGPSEDSNVMKNVQRSLATDLQNLSVELRKKQSTYLKRLRQQKEGQDGVDLEMNINGRKSRFEDDDLDSMVFNEHQMAKLKKSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGIVTCATVLLIMCFVMLVLLIIKEIIL 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi376g00020 326 SMART SynN_4 71 186 IPR006011 GO:0016020
Gabi376g00020 326 Coils Coil 84 104 - -
Gabi376g00020 326 Gene3D - 77 284 - -
Gabi376g00020 326 PANTHER SYNTAXIN 83 312 IPR045242 -
Gabi376g00020 326 ProSitePatterns Syntaxin / epimorphin family signature. 236 275 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gabi376g00020 326 SUPERFAMILY t-snare proteins 76 285 IPR010989 GO:0016020|GO:0016192
Gabi376g00020 326 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 230 292 IPR000727 -
Gabi376g00020 326 MobiDBLite consensus disorder prediction 12 39 - -
Gabi376g00020 326 SMART tSNARE_6 225 292 IPR000727 -
Gabi376g00020 326 FunFam Syntaxin-43 77 284 - -
Gabi376g00020 326 MobiDBLite consensus disorder prediction 20 39 - -
Gabi376g00020 326 CDD SNARE_syntaxin16 235 291 - -
Gabi376g00020 326 Pfam SNARE domain 266 318 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi376g00020 Gabi-Chr376 135877 141429 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi376g00020 1 326 SNARE and Associated Proteins AT5G26980 77.064 0.0 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi376g00020 K08489 - gmx:100796741 541.962