LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi376g00015	ATGGGTAACAGTAGGAGGAAGAAGCATGATCTGGAGTTAGAGAAAGCTCGCTTAATCAGCTTAGCCCTTGATTTCGGCTTCGACCAACACTCCGCCAGCAATTGCTTCGATCGTCTTCTCGCTCTCTACGGTGATGATGGTCGTGATTTTATCACCGTCGAGCACTGCGGCGATGATTTTCTCGCGGTTTTGGCGGAGTCCATGCAAGCCACTGAGGAATGGGATGATTTGCAGGAAATGGAATCACAAGCTTGTGGAACTTTGTCTCACATGCTTGACAAAACTGTTGGCACGTGCGGTAATGCAGATGATGATTCTTCTAGATGCTTCATTAATATTATTGACGATTCGCCCGAATCTCAGAAGCACCACAGGAAAGTAGTGGAGTTGGATTCCAGTGATGATGAGTATGTGGACTTTAGTATTTCAAGGGAAAAATCTGTATTTCTTGGACAACATTCCCCAAAATATACGGATTGCAGAAGTGGCATCACTCAAGGCTCAGTTCCCAGCAAAATACAATCGTCCTTTACTTCGAACGATAAGAACGGAACTCTCTCTTATGAAGAATTGCAGGCTCTAGATGATATTGAATTGGCAAATGTTGTTATCTTTGGTAATAGGACATTTCGACCATTGCAGCATCAAGCATGTAAAGCAGCTTTGGCAAAGCATGATTCTTTTATTCTTATGCCTACTGGGGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCAACTCTTCAACCAGGTGTCACAGTAGTTGTATCTCCCTTACTTTCACTCATTCAGGATCAGATAATAACACTAAATCTCAAGTTTGGAATACCCGCAACTTTTTTAAATTCTCAACAAACTACTTCCCAAGCCACAGCTGTCCTCCAAGAGCTAAGGAAAGATAAACCGTCTTGCAAGCTCTTGTATGTGACCCCCGAGAGAATTGCTGGCAACCATTCATTTCTTGAGATACTAAAATGCATGCATCAAAAGGGGCAGCTAGCAGGTTTTGTTGTTGATGAGGCACACTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGATTATCGGGGATTAGGATCTCTCAAGCAAAACTTTCCAGATGTACCTGTCATGGCATTGACTGCCACTGCAACCCACTCAGTTCGTGAGGACATTTTAAATGCTTTGAGAATCCCCCATGCACTTGTTCTTGAAAGAAGCTTTGACAGACCGAATTTGAAGTATGAAGTAATTGTTAAGACAAAGGAACCACTGAAGCAGCTTGGACAACTACTAATGGATTGTTTCAAGAATCAGTGTGGAATTGTTTACTGCCTTTCAAAAAATGAATGTGTAGAGGTCTCCAAATTTTTGAATGAGAAATGTAAGATTAAGACAGTGTATTACCATGCTGGCTTGGCTGCTCGCCAGAGAGTTGCTGTTCAAAAGAAATGGCATGAGGGAGAGGTCCATGTTGTATGTGCAACTATTGCTTTTGGAATGGGGATAGACAAACCTGATGTTCGCTTTGTCATCCATAATACAATGTCAAAATCAATTGAAAGCTATTACCAAGAATCAGGAAGGGCTGGAAGAGATAATCTTCCGGCAGTTTGCATTGCTCTATACCAGAAGAAGGATTTTAGTAGAGTTGTATGCATGATAAGAAACGGCCAAGGATATAAAAGGGAAAGTTTTAAGACAGCAATGGCTCAAGCCAAAAAGATGCAACAGTACTGTGAACTAAAGGTTGAATGCCGGAGACAAAGTTTACTCAAACACTTTGGAGAATCTTTTGATCGAAAAGCCTGCAAGTATGGATCTAACCCCTGTGATAACTGTCTTAAGATTGCATTGTAA	1836	0.4188	MGNSRRKKHDLELEKARLISLALDFGFDQHSASNCFDRLLALYGDDGRDFITVEHCGDDFLAVLAESMQATEEWDDLQEMESQACGTLSHMLDKTVGTCGNADDDSSRCFINIIDDSPESQKHHRKVVELDSSDDEYVDFSISREKSVFLGQHSPKYTDCRSGITQGSVPSKIQSSFTSNDKNGTLSYEELQALDDIELANVVIFGNRTFRPLQHQACKAALAKHDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTTSQATAVLQELRKDKPSCKLLYVTPERIAGNHSFLEILKCMHQKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQNFPDVPVMALTATATHSVREDILNALRIPHALVLERSFDRPNLKYEVIVKTKEPLKQLGQLLMDCFKNQCGIVYCLSKNECVEVSKFLNEKCKIKTVYYHAGLAARQRVAVQKKWHEGEVHVVCATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCMIRNGQGYKRESFKTAMAQAKKMQQYCELKVECRRQSLLKHFGESFDRKACKYGSNPCDNCLKIAL	611

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi376g00015	611	PANTHER	DNA HELICASE RECQ FAMILY MEMBER	191	607	-	-
	Gabi376g00015	611	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	419	574	IPR001650	-
	Gabi376g00015	611	Pfam	Helicase conserved C-terminal domain	429	525	IPR001650	-
	Gabi376g00015	611	CDD	DEXHc_RecQ	204	401	-	-
	Gabi376g00015	611	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	218	394	IPR014001	-
	Gabi376g00015	611	Pfam	DEAD/DEAH box helicase	212	380	IPR011545	GO:0003676\|GO:0005524
	Gabi376g00015	611	NCBIfam	RecQ family ATP-dependent DNA helicase	204	608	IPR004589	GO:0004386\|GO:0006310
	Gabi376g00015	611	Gene3D	-	402	609	IPR027417	-
	Gabi376g00015	611	SMART	helicmild6	444	526	IPR001650	-
	Gabi376g00015	611	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	249	547	IPR027417	-
	Gabi376g00015	611	CDD	SF2_C_RecQ	402	535	-	-
	Gabi376g00015	611	Pfam	RecQ zinc-binding	538	607	IPR032284	-
	Gabi376g00015	611	SMART	ultradead3	206	410	IPR014001	-
	Gabi376g00015	611	FunFam	ATP-dependent DNA helicase	191	401	-	-
	Gabi376g00015	611	ProSitePatterns	DEAH-box subfamily ATP-dependent helicases signature.	333	342	IPR002464	-
	Gabi376g00015	611	Gene3D	-	171	401	IPR027417	-
	Gabi376g00015	611	FunFam	ATP-dependent DNA helicase	402	609	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi376g00015	Gabi-Chr376	92159	98260	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi376g00015	424	544	Eukaryotic Initiation Factors Gene Family	AT5G11170	28.099	3.69e-09	57.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi376g00015	K10899		-	gmx:100806070	1032.71