Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3768g00029 ATGGAACCCAGATTTGGGTATCTTGTTCTGCTGCAATTGTTATTGTTTTCGGGTTCAGTTCCTTTTATTGCAGAATCCAAGTGTACACAGGGTTGTCCACTAGCTTTAGGCTCCTACTACATATTGAGAGGCACAAACCTCACATATATTTCAGGGATTTTGGCATCCCAAGTTCTTACAAGTCCTGATGACATAGTTAGTTACAGCAAAGCTACAATACCAAACAAAGACAGTGTTCAATCAGACATAAGGGTCAACGCTCCATTCCCATGTGATTGTATTAATGGTGAGTTTCTTGGTCACACGTTTCAGTATGATGTTCAGAATGGGGACACTTATGAGAAAGTTGCTGGTACCAATTATGCCAACCTAACCAATGTTAATTGGTTGATGAAGTTCAATAGATATCCATCCAATAACATTCCTGACACTGGAACGCTTAATGTTACCATTAACTGTTCTTGTGGTGATAGTGATGTCTCAAATTATGGGTTGTTCATCACATACCCTCTTAGGCCTGGGGAGACTTTGGGGACTGTGGCAAGTTCTGTGGATCTTGACTCGGGGTTGTTGCAGAGGTACAATCCTGGTGTTAATTTCAACCAAGGGAGTGGCCTGGTTTATATTCCGGGCAAAGATCAAAATGGTAGCTATGTGTTTTTGGGGTCCAGCACAGGTCTTGGTGGTGGTGCTATTGCTGGAATAGCTGTTGGAGTAGTGGTTGTTCTTCTATTATTGGTAGTTGGTATATATGTCGGATATTTCCGGAAGAGGAAGATACAGAAGGAGGATCTTCTTCCACAAGATTCCAAAGCACTCTTTGCTCAAGATGGGAAGGGTATAGTTATTTCAAATTCTCAGGGTGCTGCAAATGAAACTTCAGGACCTGGTGGTCCTTCTGCCATCACAGGCGTAACAGTGGACAAATCAGTGGAGTTCTCATTAGATGAATTAGCAACGGCCACAGATAACTTTAGTATGGCTAAGAGAATTGGTAAAGGTGGTTTTGGCACTGTCTACTATGCAGAGTTGAGGGGAGAGAAAGCTGCAATCAAGAAGATGGATATGCAAGCATCAAAAGAATTTCTTGCTGAATTGAAAGTCCTGACACGTGTTCACCATCTTAACCTGGTGCGGTTGATCGGATATAGTATCGAGGGCTCTCTTTTCCTTGTCTATGAATTCATGGAGAATGGAAACTTAAGTGAACATCTGCGTGATTCAGGTAAAAGAGATCCACTGCCATGGGCTACCCGAGTGCAGATTGCTTTGGATTCCGCCAGAGGTCTTGAATATATTCATGAGCATACAGTGCCTGTATACATTCATCGTGACATAAAGACAGCAAATATATTAATAGACAAAAACTTCCGGGGAAAGGTTGCTGATTTTGGATTGACAAAACTGACAGAAGTTGGAAGCTCATCCCTTCCCACTGGTCGTCTTGTTGGAACATTTGGATACATGCCACCAGAGTATGCTCAATATGGAGATGTGTCTCCCAAAGTAGATGTGTATGCTTTTGGAGTTGTTCTTTATGAGCTTATTTCGGCTAAGGAAGCTATTGTCAAGACAAGCGAATCAGTTGCTGACTCAAAGGGCCTCGTAGCTTTGTTCGAAGGAGTTCTTAGTCAGCCTGATCCTACAGAAGATCTTTGCAAACTAGTGGATCCAAGGCTTGGGGATAACTACCCTATTGATTCAGTTCGCAAGATGGCTCAACTAGCCCACGCATGTACACAGGACAATCCCCAACTACGTCCAAGTATGAGATCAATTGTGGTTGCTCTTATGACACTTTCTTCAACGACTGATGATTGGGATGTTGGCTCCTTCTACGAAAATCAAAATCTTGTGAATCTGATGTCTGGAAGATAA 1878 0.4249 MEPRFGYLVLLQLLLFSGSVPFIAESKCTQGCPLALGSYYILRGTNLTYISGILASQVLTSPDDIVSYSKATIPNKDSVQSDIRVNAPFPCDCINGEFLGHTFQYDVQNGDTYEKVAGTNYANLTNVNWLMKFNRYPSNNIPDTGTLNVTINCSCGDSDVSNYGLFITYPLRPGETLGTVASSVDLDSGLLQRYNPGVNFNQGSGLVYIPGKDQNGSYVFLGSSTGLGGGAIAGIAVGVVVVLLLLVVGIYVGYFRKRKIQKEDLLPQDSKALFAQDGKGIVISNSQGAANETSGPGGPSAITGVTVDKSVEFSLDELATATDNFSMAKRIGKGGFGTVYYAELRGEKAAIKKMDMQASKEFLAELKVLTRVHHLNLVRLIGYSIEGSLFLVYEFMENGNLSEHLRDSGKRDPLPWATRVQIALDSARGLEYIHEHTVPVYIHRDIKTANILIDKNFRGKVADFGLTKLTEVGSSSLPTGRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYELISAKEAIVKTSESVADSKGLVALFEGVLSQPDPTEDLCKLVDPRLGDNYPIDSVRKMAQLAHACTQDNPQLRPSMRSIVVALMTLSSTTDDWDVGSFYENQNLVNLMSGR 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3768g00029 625 FunFam LysM receptor kinase 2 304 395 - -
Gabi3768g00029 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Gabi3768g00029 625 ProSiteProfiles Protein kinase domain profile. 325 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3768g00029 625 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Gabi3768g00029 625 FunFam PTI1-like tyrosine-protein kinase 3 396 611 - -
Gabi3768g00029 625 Pfam Protein tyrosine and serine/threonine kinase 327 596 IPR001245 GO:0004672|GO:0006468
Gabi3768g00029 625 CDD STKc_IRAK 331 594 - -
Gabi3768g00029 625 SMART serkin_6 325 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3768g00029 625 Gene3D Phosphorylase Kinase; domain 1 304 395 - -
Gabi3768g00029 625 Gene3D Transferase(Phosphotransferase) domain 1 396 616 - -
Gabi3768g00029 625 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 20 611 IPR044812 GO:0019199|GO:0045087
Gabi3768g00029 625 SUPERFAMILY Protein kinase-like (PK-like) 306 597 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3768g00029 Gabi-Chr3768 578837 586323 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3768g00029 13 625 Receptor kinase-like Gene Family AT3G21630 58.974 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gabi3768g00029 PK_Tyr_Ser-Thr 8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3768g00029 K13429 - gmx:100777781 966.452