Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3768g00028 ATGGAACCCAGATTTGGGTATCTTGTTCTGCTGCAATTGTTATTGTTTTCGGGTTCAGTTCCTTTTATTGCAGAATCCAAGTGTACACAGGGTTGTCCACTAGCTTTAGGCTCCTACTACATATTGAGAGGCACAAACCTCACATATATTTCAGGGATTTTGGCATCCCAAGTTCTTACAAGTCCTGATGACATAGTTAGTTACAGCAAAGCTACAATACCAAACAAAGACAGTGTTCAATCAGACATAAGGGTCAACGCTCCATTCCCATGTGATTGTATTAATGGTGAGTTTCTTGGTCACACGTTTCAGTATGATGTTCAGAATGGGGACACTTATGAGAAAGTTGCTGGTACCAATTATGCCAACCTAACCAATGTTAATTGGTTGATGAAGTTCAATAGATATCCATCCAATAACATTCCTGACACTGGAACGCTTAATGTTACCATTAACTGTTCTTGTGGTGATAGTGATGTCTCAAATTATGGGTTGTTCATCACATACCCTCTTAGGCCTGGGGAGACTTTGGGGACTGTGGCAAGTTCTGTGGATCTTGACTCGGGGTTGTTGCAGAGGTACAATCCTGGTGTTAATTTCAACCAAGGGAGTGGCCTGGTTTATATTCCGGGCAAAGATCAAAATGGTAGCTATGTGTTTTTGGGGTCCAGCACAGGTCTTGGTGGTGGTGCTATTGCTGGAATAGCTGTTGGAGTAGTGGTTGTTCTTCTATTATTGGTAGTTGGTATATATGTCGGATATTTCCGGAAGAGGAAGATACAGAAGGAGGATCTTCTTCCACAAGATTCCAAAGCACTCTTTGCTCAAGATGGGAAGGACGAAAATTCTCAGGGTGCTGCAAATGAAACTTCAGGACCTGGTGGTCCTTCTGCCATCACAGGCGTAACAGTGGACAAATCAGTGGAGTTCTCATTAGATGAATTAGCAACGGCCACAGATAACTTTAGTATGGCTAAGAGAATTGGTAAAGGTGGTTTTGGCACTGTCTACTATGCAGAGTTGAGGGGAGAGAAAGCTGCAATCAAGAAGATGGATATGCAAGCATCAAAAGAATTTCTTGCTGAATTGAAAGTCCTGACACGTGTTCACCATCTTAACCTGGTGCGGTTGATCGGATATAGTATCGAGGGCTCTCTTTTCCTTGTCTATGAATTCATGGAGAATGGAAACTTAAGTGAACATCTGCGTGATTCAGGTAAAAGAGATCCACTGCCATGGGCTACCCGAGTGCAGATTGCTTTGGATTCCGCCAGAGGTCTTGAATATATTCATGAGCATACAGTGCCTGTATACATTCATCGTGACATAAAGACAGCAAATATATTAATAGACAAAAACTTCCGGGGAAAGGTTGCTGATTTTGGATTGACAAAACTGACAGAAGTTGGAAGCTCATCCCTTCCCACTGGTCGTCTTGTTGGAACATTTGGATACATGCCACCAGAGTATGCTCAATATGGAGATGTGTCTCCCAAAGTAGATGTGTATGCTTTTGGAGTTGTTCTTTATGAGCTTATTTCGGCTAAGGAAGCTATTGTCAAGACAAGCGAATCAGTTGCTGACTCAAAGGGCCTCGTAGCTTTGTTCGAAGGAGTTCTTAGTCAGCCTGATCCTACAGAAGATCTTTGCAAACTAGTGGATCCAAGGCTTGGGGATAACTACCCTATTGATTCAGTTCGCAAGATGGCTCAACTAGCCCACGCATGTACACAGGACAATCCCCAACTACGTCCAAGTATGAGATCAATTGTGGTTGCTCTTATGACACTTTCTTCAACGACTGATGATTGGGATGTTGGCTCCTTCTACGAAAATCAAAATCTTGTGAATCTGATGTCTGGAAGATAA 1869 0.4264 MEPRFGYLVLLQLLLFSGSVPFIAESKCTQGCPLALGSYYILRGTNLTYISGILASQVLTSPDDIVSYSKATIPNKDSVQSDIRVNAPFPCDCINGEFLGHTFQYDVQNGDTYEKVAGTNYANLTNVNWLMKFNRYPSNNIPDTGTLNVTINCSCGDSDVSNYGLFITYPLRPGETLGTVASSVDLDSGLLQRYNPGVNFNQGSGLVYIPGKDQNGSYVFLGSSTGLGGGAIAGIAVGVVVVLLLLVVGIYVGYFRKRKIQKEDLLPQDSKALFAQDGKDENSQGAANETSGPGGPSAITGVTVDKSVEFSLDELATATDNFSMAKRIGKGGFGTVYYAELRGEKAAIKKMDMQASKEFLAELKVLTRVHHLNLVRLIGYSIEGSLFLVYEFMENGNLSEHLRDSGKRDPLPWATRVQIALDSARGLEYIHEHTVPVYIHRDIKTANILIDKNFRGKVADFGLTKLTEVGSSSLPTGRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYELISAKEAIVKTSESVADSKGLVALFEGVLSQPDPTEDLCKLVDPRLGDNYPIDSVRKMAQLAHACTQDNPQLRPSMRSIVVALMTLSSTTDDWDVGSFYENQNLVNLMSGR 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3768g00028 622 Gene3D Phosphorylase Kinase; domain 1 301 392 - -
Gabi3768g00028 622 FunFam LysM receptor kinase 2 301 392 - -
Gabi3768g00028 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Gabi3768g00028 622 MobiDBLite consensus disorder prediction 277 298 - -
Gabi3768g00028 622 SUPERFAMILY Protein kinase-like (PK-like) 303 594 IPR011009 -
Gabi3768g00028 622 Gene3D Transferase(Phosphotransferase) domain 1 393 613 - -
Gabi3768g00028 622 MobiDBLite consensus disorder prediction 281 297 - -
Gabi3768g00028 622 CDD STKc_IRAK 328 591 - -
Gabi3768g00028 622 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
Gabi3768g00028 622 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 20 608 IPR044812 GO:0019199|GO:0045087
Gabi3768g00028 622 SMART serkin_6 322 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3768g00028 622 ProSiteProfiles Protein kinase domain profile. 322 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3768g00028 622 FunFam PTI1-like tyrosine-protein kinase 3 393 608 - -
Gabi3768g00028 622 Pfam Protein tyrosine and serine/threonine kinase 324 593 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3768g00028 Gabi-Chr3768 578837 586323 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3768g00028 13 622 Receptor kinase-like Gene Family AT3G21630 58.814 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gabi3768g00028 PK_Tyr_Ser-Thr 7.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3768g00028 K13429 - gmx:100777781 976.467