Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3768g00027 ATGGAACCCAGATTTGGGTATCTTGTTCTGCTGCAATTGTTATTGTTTTCGGGTTCAGTTCCTTTTATTGCAGAATCCAAGTGTACACAGGGTTGTCCACTAGCTTTAGGCTCCTACTACATATTGAGAGGCACAAACCTCACATATATTTCAGGGATTTTGGCATCCCAAGTTCTTACAAGTCCTGATGACATAGTTAGTTACAGCAAAGCTACAATACCAAACAAAGACAGTGTTCAATCAGACATAAGGGTCAACGCTCCATTCCCATGTGATTGTATTAATGGTGAGTTTCTTGGTCACACGTTTCAGTATGATGTTCAGAATGGGGACACTTATGAGAAAGTTGCTGGTACCAATTATGCCAACCTAACCAATGTTAATTGGTTGATGAAGTTCAATAGATATCCATCCAATAACATTCCTGACACTGGAACGCTTAATGTTACCATTAACTGTTCTTGTGGTGATAGTGATGTCTCAAATTATGGGTTGTTCATCACATACCCTCTTAGGCCTGGGGAGACTTTGGGGACTGTGGCAAGTTCTGTGGATCTTGACTCGGGGTTGTTGCAGAGGTACAATCCTGGTGTTAATTTCAACCAAGGGAGTGGCCTGGTTTATATTCCGGGCAAAGATCAAAATGGTAGCTATGTGTTTTTGGGGTCCAGTTCAGGAGGTCTTGGTGGTGGTGCTATTGCTGGAATAGCTGTTGGAGTAGTGGTTGTTCTTCTATTATTGGTAGTTGGTATATATGTCGGATATTTCCGGAAGAGGAAGATACAGAAGGAGGATCTTCTTCCACAAGATTCCAAAGCACTCTTTGCTCAAGATGGGAAGGACGAAAATTCTCAGGGTGCTGCAAATGAAACTTCAGGACCTGGTGGTCCTTCTGCCATCACAGGCGTAACAGTGGACAAATCAGTGGAGTTCTCATTAGATGAATTAGCAACGGCCACAGATAACTTTAGTATGGCTAAGAGAATTGGTAAAGGTGGTTTTGGCACTGTCTACTATGCAGAGTTGAGGGGAGAGAAAGCTGCAATCAAGAAGATGGATATGCAAGCATCAAAAGAATTTCTTGCTGAATTGAAAGTCCTGACACGTGTTCACCATCTTAACCTGGTGCGGTTGATCGGATATAGTATCGAGGGCTCTCTTTTCCTTGTCTATGAATTCATGGAGAATGGAAACTTAAGTGAACATCTGCGTGATTCAGGTAAAAGAGATCCACTGCCATGGGCTACCCGAGTGCAGATTGCTTTGGATTCCGCCAGAGGTCTTGAATATATTCATGAGCATACAGTGCCTGTATACATTCATCGTGACATAAAGACAGCAAATATATTAATAGACAAAAACTTCCGGGGAAAGGTTGCTGATTTTGGATTGACAAAACTGACAGAAGTTGGAAGCTCATCCCTTCCCACTGGTCGTCTTGTTGGAACATTTGGATACATGCCACCAGAGTATGCTCAATATGGAGATGTGTCTCCCAAAGTAGATGTGTATGCTTTTGGAGTTGTTCTTTATGAGCTTATTTCGGCTAAGGAAGCTATTGTCAAGACAAGCGAATCAGTTGCTGACTCAAAGGGCCTCGTAGCTTTGTTCGAAGGAGTTCTTAGTCAGCCTGATCCTACAGAAGATCTTTGCAAACTAGTGGATCCAAGGCTTGGGGATAACTACCCTATTGATTCAGTTCGCAAGATGGCTCAACTAGCCCACGCATGTACACAGGACAATCCCCAACTACGTCCAAGTATGAGATCAATTGTGGTTGCTCTTATGACACTTTCTTCAACGACTGATGATTGGGATGTTGGCTCCTTCTACGAAAATCAAAATCTTGTGAATCTGATGTCTGGAAGATAA 1872 0.4263 MEPRFGYLVLLQLLLFSGSVPFIAESKCTQGCPLALGSYYILRGTNLTYISGILASQVLTSPDDIVSYSKATIPNKDSVQSDIRVNAPFPCDCINGEFLGHTFQYDVQNGDTYEKVAGTNYANLTNVNWLMKFNRYPSNNIPDTGTLNVTINCSCGDSDVSNYGLFITYPLRPGETLGTVASSVDLDSGLLQRYNPGVNFNQGSGLVYIPGKDQNGSYVFLGSSSGGLGGGAIAGIAVGVVVVLLLLVVGIYVGYFRKRKIQKEDLLPQDSKALFAQDGKDENSQGAANETSGPGGPSAITGVTVDKSVEFSLDELATATDNFSMAKRIGKGGFGTVYYAELRGEKAAIKKMDMQASKEFLAELKVLTRVHHLNLVRLIGYSIEGSLFLVYEFMENGNLSEHLRDSGKRDPLPWATRVQIALDSARGLEYIHEHTVPVYIHRDIKTANILIDKNFRGKVADFGLTKLTEVGSSSLPTGRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYELISAKEAIVKTSESVADSKGLVALFEGVLSQPDPTEDLCKLVDPRLGDNYPIDSVRKMAQLAHACTQDNPQLRPSMRSIVVALMTLSSTTDDWDVGSFYENQNLVNLMSGR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3768g00027 623 CDD STKc_IRAK 329 592 - -
Gabi3768g00027 623 MobiDBLite consensus disorder prediction 278 299 - -
Gabi3768g00027 623 SMART serkin_6 323 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3768g00027 623 ProSiteProfiles Protein kinase domain profile. 323 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3768g00027 623 Pfam Protein tyrosine and serine/threonine kinase 325 594 IPR001245 GO:0004672|GO:0006468
Gabi3768g00027 623 MobiDBLite consensus disorder prediction 282 298 - -
Gabi3768g00027 623 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Gabi3768g00027 623 FunFam LysM receptor kinase 2 302 393 - -
Gabi3768g00027 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Gabi3768g00027 623 SUPERFAMILY Protein kinase-like (PK-like) 304 595 IPR011009 -
Gabi3768g00027 623 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 20 609 IPR044812 GO:0019199|GO:0045087
Gabi3768g00027 623 FunFam PTI1-like tyrosine-protein kinase 3 394 609 - -
Gabi3768g00027 623 Gene3D Phosphorylase Kinase; domain 1 302 393 - -
Gabi3768g00027 623 Gene3D Transferase(Phosphotransferase) domain 1 394 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3768g00027 Gabi-Chr3768 578837 586323 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3768g00027 13 623 Receptor kinase-like Gene Family AT3G21630 58.814 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gabi3768g00027 PK_Tyr_Ser-Thr 8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3768g00027 K13429 - gmx:100777781 973.77