Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3768g00021 ATGTTAGATAGATTAGAGCAAGAAGATAACTATGAAGATGGTAGCTTAGTCTTGGAGAAGAAAAGGAGACTCAGTTATGATCAGGTCAAAGCGTTAGAGATGAGTTTTGAGATGGATAACAAGTTAGAGCCAGAGCGCAAAGTGAAGTTAGCAGAAGAACTAGGCTTGCAACCAAGACAAGTTGCTATTTGGTTCCAAAATCGACGAGCCCGTTGGAAAACTAAGCAATTGGAGAGAGATTATGGTATTCTCAAGTCCAATTTTGATATTCTCAAGGTTGAGTATAATAATCTTGAGCAAGAGAATGAGGCTCTTACTATAAAGCTAAGAGAGTTAAAAGCAAAATTGTGTGAAGGAAGAGGTGAAAGCAATGATTCAGTGAAAGAAGAATGTCCAATTTCAGAAGTTAGAGACAGAGGAGCATCAGAGAGCAATTCAAATGGTTTGGTTAAGGAAGAAAGTAATGTTGATTCTCCTTTGTGTTTCAATGGATCTTTGCCTAGTTCAAGTTCAGTGATAAACTGGCTTCACTACTCTGATTCAAGAGGGTCTCCTGATAGAACGTTTGAGACTCACTTTGTGAGAAAGGAGGAGCAGAATTTCTTTAGTATTAATGAACTTAGCAGTTTCTTTTCAGTTGATCAATCACCTACCCTGTAA 660 0.3788 MLDRLEQEDNYEDGSLVLEKKRRLSYDQVKALEMSFEMDNKLEPERKVKLAEELGLQPRQVAIWFQNRRARWKTKQLERDYGILKSNFDILKVEYNNLEQENEALTIKLRELKAKLCEGRGESNDSVKEECPISEVRDRGASESNSNGLVKEESNVDSPLCFNGSLPSSSSVINWLHYSDSRGSPDRTFETHFVRKEEQNFFSINELSSFFSVDQSPTL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3768g00021 219 CDD homeodomain 20 76 IPR001356 GO:0003677
Gabi3768g00021 219 Pfam Homeodomain 20 73 IPR001356 GO:0003677
Gabi3768g00021 219 Gene3D - 14 80 - -
Gabi3768g00021 219 ProSiteProfiles 'Homeobox' domain profile. 15 75 IPR001356 GO:0003677
Gabi3768g00021 219 SUPERFAMILY Homeodomain-like 20 86 IPR009057 -
Gabi3768g00021 219 MobiDBLite consensus disorder prediction 139 154 - -
Gabi3768g00021 219 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 9 147 IPR045224 GO:0003700
Gabi3768g00021 219 MobiDBLite consensus disorder prediction 122 137 - -
Gabi3768g00021 219 MobiDBLite consensus disorder prediction 122 154 - -
Gabi3768g00021 219 Coils Coil 81 115 - -
Gabi3768g00021 219 SMART HOX_1 18 79 IPR001356 GO:0003677
Gabi3768g00021 219 FunFam homeobox-leucine zipper protein ATHB-6-like 23 69 - -
Gabi3768g00021 219 ProSitePatterns 'Homeobox' domain signature. 50 73 IPR017970 GO:0000981|GO:0006355
Gabi3768g00021 219 Pfam Homeobox associated leucine zipper 75 116 IPR003106 GO:0006355|GO:0043565
Gabi3768g00021 219 PRINTS Lambda-repressor HTH signature 46 55 IPR000047 GO:0003677
Gabi3768g00021 219 PRINTS Lambda-repressor HTH signature 55 71 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3768g00021 Gabi-Chr3768 445234 446326 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3768g00021 1 116 Homeobox Transcription Factor Family AT5G65310 65.854 2.75e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi3768g00021 Homeodomain 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3768g00021 K09338 - qsa:O6P43_015335 271.552