Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3768g00020 ATGAAGAGGCTCAATAACTCAGATAATATGGCTTCTATGCTTTCCATGTGCCCATCAAAAGGGTTGAATCAGAGGAAAGAAACTCAGGGTTACAGTGAAGAATTTCAGGCAATGTTAGATAGATTAGAGCAAGAAGATAACTATGAAGATGGTAGCTTAGTCTTGGAGAAGAAAAGGAGACTCAGTTATGATCAGGTCAAAGCGTTAGAGATGAGTTTTGAGATGGATAACAAGTTAGAGCCAGAGCGCAAAGTGAAGTTAGCAGAAGAACTAGGCTTGCAACCAAGACAAGTTGCTATTTGGTTCCAAAATCGACGAGCCCGTTGGAAAACTAAGCAATTGGAGAGAGATTATGGTATTCTCAAGTCCAATTTTGATATTCTCAAGGTTGAGTATAATAATCTTGAGCAAGAGAATGAGGCTCTTACTATAAAGCTAAGAGAGTTAAAAGCAAAATTGTGTGAAGGAAGAGGTGAAAGCAATGATTCAGTGAAAGAAGAATGTCCAATTTCAGAAGTTAGAGACAGAGGAGCATCAGAGAGCAATTCAAATGGTTTGGTTAAGGAAGAAAGTAATGTTGATTCTCCTTTGTGTTTCAATGGATCTTTGCCTAGTTCAAGTTCAGTGATAAACTGGCTTCACTACTCTGATTCAAGAGGGTCTCCTGATAGAACGTTTGAGACTCACTTTGTGAGAAAGGAGGAGCAGAATTTCTTTAGTATTAATGAACTTAGCAGTTTCTTTTCAGTTGATCAATCACCTACCCTGTAA 771 0.3826 MKRLNNSDNMASMLSMCPSKGLNQRKETQGYSEEFQAMLDRLEQEDNYEDGSLVLEKKRRLSYDQVKALEMSFEMDNKLEPERKVKLAEELGLQPRQVAIWFQNRRARWKTKQLERDYGILKSNFDILKVEYNNLEQENEALTIKLRELKAKLCEGRGESNDSVKEECPISEVRDRGASESNSNGLVKEESNVDSPLCFNGSLPSSSSVINWLHYSDSRGSPDRTFETHFVRKEEQNFFSINELSSFFSVDQSPTL 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3768g00020 256 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Gabi3768g00020 256 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Gabi3768g00020 256 Coils Coil 25 45 - -
Gabi3768g00020 256 Gene3D - 51 117 - -
Gabi3768g00020 256 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Gabi3768g00020 256 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Gabi3768g00020 256 MobiDBLite consensus disorder prediction 176 191 - -
Gabi3768g00020 256 Pfam Homeobox associated leucine zipper 112 153 IPR003106 GO:0006355|GO:0043565
Gabi3768g00020 256 SMART HOX_1 55 116 IPR001356 GO:0003677
Gabi3768g00020 256 MobiDBLite consensus disorder prediction 159 191 - -
Gabi3768g00020 256 MobiDBLite consensus disorder prediction 159 174 - -
Gabi3768g00020 256 Coils Coil 118 152 - -
Gabi3768g00020 256 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 34 184 IPR045224 GO:0003700
Gabi3768g00020 256 SUPERFAMILY Homeodomain-like 57 123 IPR009057 -
Gabi3768g00020 256 FunFam homeobox-leucine zipper protein ATHB-6-like 60 106 - -
Gabi3768g00020 256 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Gabi3768g00020 256 CDD homeodomain 57 113 IPR001356 GO:0003677
Gabi3768g00020 256 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3768g00020 Gabi-Chr3768 444776 446326 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3768g00020 1 153 Homeobox Transcription Factor Family AT2G22430 54.140 2.47e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi3768g00020 Homeodomain 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3768g00020 K09338 - qsa:O6P43_015335 310.071