Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3768g00012 ATGAATAAGAAGTCTCTGGCGTTACTTGCCACAACCATTTCGACGAAGCTCCGCGTTCCACCTTCTCAATGGCGATTCTACTGTTCTCCACCCTTATCTTCCTCTCCTCCTTCCACCAATAAGCTCTTTGTTGGAGGGTTGTCATGGTCAGTGGACGAAAAGTCCTTCAAAGACGCTTTCTCTTCGTTCGGAGATGTCACTGAAGTTAGGATAGTGTATGATAAAGACAGTGGCAGATCTAGAGGCTTTGGATTTGTCGTCTTTACAAATGAAGATGATGCCAAATGTGCAAAGGATGCAATGGATGGAAAAGCACTGTTAGGTAGACCATTGAGGATAAATTTTGCTCTTGAAAAGGCCCGTGGTGCACCTGTTGTAGTTCCTCGACTTTCAGATGTTGGACATTTAAACAGGCACTGA 420 0.4452 MNKKSLALLATTISTKLRVPPSQWRFYCSPPLSSSPPSTNKLFVGGLSWSVDEKSFKDAFSSFGDVTEVRIVYDKDSGRSRGFGFVVFTNEDDAKCAKDAMDGKALLGRPLRINFALEKARGAPVVVPRLSDVGHLNRH 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3768g00012 139 Gene3D - 20 122 IPR012677 -
Gabi3768g00012 139 SUPERFAMILY RNA-binding domain, RBD 15 122 IPR035979 GO:0003676
Gabi3768g00012 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Gabi3768g00012 139 SMART rrm1_1 41 114 IPR000504 GO:0003723
Gabi3768g00012 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Gabi3768g00012 139 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 36 120 - -
Gabi3768g00012 139 CDD RRM2_NsCP33_like 41 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3768g00012 Gabi-Chr3768 250242 252844 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3768g00012 42 119 C2H2 Transcription Factor Family AT2G19380 37.500 3.55e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3768g00012 - - lang:109361234 236.498