LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3768g00008	ATGGCTGTTCAAGCATTCTCATCTTCCTTCTTCACCTATGGATTCAGTTTCGACGTGTTCCTCAGCTTCAAAGGCACAGATACACGCTACGGTTTTACTGGAAATCTCTACAAAACTCTTCAAGACAAGGGAATCCACACCTTCATTGATGATGAGGAGCTTCAGAGAGGAGAGGAAATCACACCATCACTTCTCAGGGCAATTGAAGAGTCCAGGATTGCTATTATTATACTCTCTGAAAACTATGCATCTTCTTCATTCTGCTTAGACGAACTTTCCAAGATCATTGATTGCATTAAGGGAAACGGTCGATTGGTTTTGCCTGTTTTTTATGAAGTGGATCCATCTGATGTGCGAAAGCAGAGAGGGACCTTTGGAGAAGCAATGGCTATGCATGGGGAGAGGTTCAATGATAACATGAATAAGTTGCTAAAATGGAGGATGGCTTTGCAACAAGTAGCTAATTTGTCCGGCTATCATTACAAACATGGGGAAGGATATGAATATGAGTTTATTGAGAAGATTGTTGAATTGGTCTCTAGCAAGATTAATCGTGCTCCTTTACATGTTGCGGATTACCCAATTGGACTAGAGTCACGAGTGCTACATGTAAAGTCGCTTTTGGATGTTGGAAATGATGATGGTGTCCACATGGTAGGGATCCATGGAATTGGGGGTATAGGTAAAACAACCCTAGTTCTAACTATTTATAATTTGATTGCTGACCATTTTGATGGCTTATGTTTTCTTGAGAACGTGAGAGAAAATTCAAACAAAAAAGGGTTAAAACATCTCCAACAAGTCATTCTTTCTGAAATGTTTAGAGGGAGAAAAATTAAGTTAACAAGTGTCAAACAAGGAATTTCAATAATACAACATAGGCTTCAACAAAAGAAGGTTCTTTTGATTCTAGATGATGTTAACAAAATAGAGCAACTAGAGGCCTTGGCTGGAGGATCTAATTGGTTTGGTCCTGGCAGCAGAGTGATCATTACCGCTCGGGACAAACATTTGCTGGCAAGTCATGGGGTTGAAAGAACATATGAGATCAATGGGTTAAATAAGACAGAAGCTCTTGAATTACTTAGGTGGAATGCTTTTAAAAATAACAAAGTTGATCCAAGTTACAAGGACATTTTAAACCGTGCAGCAACTTATGCTTGTGGACTTCCATTGGCTTTGGAAGTAATAGGTTCCAACTTGTTTGGAAAAAGTATAGAAGATTGGAAATCTGCCTTAAATTACTATGAAAGAATTCCAAATAAAGAAATCCAAAAGATACTTAAACTAAGCTTTGATGCTTTGGAGGAAGAAGAGAAGAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATATCAATTCGCAGAGGTCAAAGATATACTTCATGCTCATTATGGTGAATGCATGAAATATCATATTGGAGTGCTAGCAGAAAGATCTCTTATAAAGATTAGCTCGGGTTGGGTGAGACTACATGACTTGATAGAGGACATGGGTAAAGAAATTGTTCGACGTAAATCACCGAAAGAGCCTGGGAAACGCAGTAGACTATGGTTTTCTGAAGATATATTTCATGTTTTGGAAAAAAATACGGGAACGAATGCGATTGAAATCATATATTTGGATTTCCCCTTATTTGGCGAAGAAGAAGTAATAGTACAATGGAATGGAAAGGCCTTCGAGAATATGAAAAACCTCAAAACACTTGTTATAAGAAAAGGTCATTTTTCTAAAGGTCCCGAACATCTTCCAAATAGTTTGAGAGTTCTAGAATGGCAGAGATTTCCTTCACAACATTTACCATCTGATTTTCTCCCCAAGAAACTAGCCATATGCAAGTTACCCAAAGGTTGCTTTACGTCATTAGAGTTGGTTGTCTTATTGAAAAAGTTTGTGAGATTGAAAGTTTTGGATTTTGATGAGTGTGAAGGTTTAACACAGATACCTGACGTATCTGGTCTCCCAAATTTAGAAAAGTTTTCTTTTGAAGGGTGTGTGAATTTAATTACCATTCACGATTCAGTTGGGTTCCTAGATAAACTTAAAATCTTGAATGCTAATGGATGCACCAGACTTGGAAGTTTTCCACCGATCAAGTTGAGCTCTCTAGAACAACTCGATCTTTCATGTTGCTCAAGTCTCCAGACTTTTCCTGAAATAATAGGAAAGATTGAAAACATAAAATATATTGACTTTTATGAAACTCCCATAAAAGAATTGCCATTAGTATTTCAAAATATTACTCAGCTTCAAGAATTATTTGTCAGTGACTGTGGAATTGTTCAGTTAACAAGTGTCGTTGTCATGAAGTCAGAATTGACTGTGATTACCGGTTCAGATTGGAAAAAGTGCCTATTTCCAAAAGAGGATGAGGTTCAAGAAATCATGGTGTCTTCAAACGTAGAATATCTTCAGCTTGAACAGTGTAACCTGTTAGATGAATTTCATCCAATAGGTTTCACTTGGTTTGCTAATGTAAAAGATGTAAAACTCTCGGGTATTGATTACACAAATATTCCTGAAGGTGTCAAAGAATGTCGCTTTATGAGCAAGCTTAATTTGGATGATTGTAAACATCTTAAAGAAATGAAAGAGATTCCACCAAACTTAATATATTTCTATGCAAGAAGCTGCAAATCTTCGACTTCCTCGTCTAGAAGCATGTTGCAGAAACAGGAAATACATGAGGCTGGAAACACCATGTTTGTTTTAGGAGCAGCAAGGATTCCAAAGTGGTTCAACCACCACAGCAAAGGACCATCAATTTCTTTCTGGTTTCGTAACAAGTTCCCTGCCATAGCTCTTTGTCTTGTTATGGACAACGTGTCTAATGACTTTACACCAGTCGTGATCATCAATGGTGACATATATGACAATAACAACATGGTGCAAATGGATCAAACATATCTTTATGATATGCAAAAGAAAAAACCCAACCATAATCGAGTGCCTTTAGAAAATGAATGGAACCATGTGGAGGTTACGTGTGAGTTTTGGAAAAAAAATCAAAAGATACCAATCCTTAAGGAAAGCGGAATCCATGTATTCAAACAGAAAACTAAGATGGTGGTTGTTCGATTCACTAATCCTTATAGAAATAGAAAATTAGATGATAATCCCAATAGTTCAGAATCACAAAACCACCCGTTGCTGAAAAAACATAAGTTCGTGGACACAACTCAATAG	3189	0.3713	MAVQAFSSSFFTYGFSFDVFLSFKGTDTRYGFTGNLYKTLQDKGIHTFIDDEELQRGEEITPSLLRAIEESRIAIIILSENYASSSFCLDELSKIIDCIKGNGRLVLPVFYEVDPSDVRKQRGTFGEAMAMHGERFNDNMNKLLKWRMALQQVANLSGYHYKHGEGYEYEFIEKIVELVSSKINRAPLHVADYPIGLESRVLHVKSLLDVGNDDGVHMVGIHGIGGIGKTTLVLTIYNLIADHFDGLCFLENVRENSNKKGLKHLQQVILSEMFRGRKIKLTSVKQGISIIQHRLQQKKVLLILDDVNKIEQLEALAGGSNWFGPGSRVIITARDKHLLASHGVERTYEINGLNKTEALELLRWNAFKNNKVDPSYKDILNRAATYACGLPLALEVIGSNLFGKSIEDWKSALNYYERIPNKEIQKILKLSFDALEEEEKSVFLDIACCFKGYQFAEVKDILHAHYGECMKYHIGVLAERSLIKISSGWVRLHDLIEDMGKEIVRRKSPKEPGKRSRLWFSEDIFHVLEKNTGTNAIEIIYLDFPLFGEEEVIVQWNGKAFENMKNLKTLVIRKGHFSKGPEHLPNSLRVLEWQRFPSQHLPSDFLPKKLAICKLPKGCFTSLELVVLLKKFVRLKVLDFDECEGLTQIPDVSGLPNLEKFSFEGCVNLITIHDSVGFLDKLKILNANGCTRLGSFPPIKLSSLEQLDLSCCSSLQTFPEIIGKIENIKYIDFYETPIKELPLVFQNITQLQELFVSDCGIVQLTSVVVMKSELTVITGSDWKKCLFPKEDEVQEIMVSSNVEYLQLEQCNLLDEFHPIGFTWFANVKDVKLSGIDYTNIPEGVKECRFMSKLNLDDCKHLKEMKEIPPNLIYFYARSCKSSTSSSRSMLQKQEIHEAGNTMFVLGAARIPKWFNHHSKGPSISFWFRNKFPAIALCLVMDNVSNDFTPVVIINGDIYDNNNMVQMDQTYLYDMQKKKPNHNRVPLENEWNHVEVTCEFWKKNQKIPILKESGIHVFKQKTKMVVVRFTNPYRNRKLDDNPNSSESQNHPLLKKHKFVDTTQ	1062

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3768g00008	1062	PRINTS	Disease resistance protein signature	218	233	-	-
	Gabi3768g00008	1062	PRINTS	Disease resistance protein signature	387	401	-	-
	Gabi3768g00008	1062	PRINTS	Disease resistance protein signature	294	308	-	-
	Gabi3768g00008	1062	PRINTS	Disease resistance protein signature	699	715	-	-
	Gabi3768g00008	1062	Pfam	TIR domain	17	184	IPR000157	GO:0007165
	Gabi3768g00008	1062	MobiDBLite	consensus disorder prediction	1034	1062	-	-
	Gabi3768g00008	1062	Gene3D	-	182	346	IPR027417	-
	Gabi3768g00008	1062	FunFam	Disease resistance protein (TIR-NBS-LRR class)	14	185	-	-
	Gabi3768g00008	1062	ProSiteProfiles	TIR domain profile.	15	183	IPR000157	GO:0007165
	Gabi3768g00008	1062	Gene3D	Ribonuclease Inhibitor	553	894	IPR032675	-
	Gabi3768g00008	1062	SMART	till_3	16	156	IPR000157	GO:0007165
	Gabi3768g00008	1062	Gene3D	-	16	181	IPR035897	-
	Gabi3768g00008	1062	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	182	446	IPR027417	-
	Gabi3768g00008	1062	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	18	720	IPR044974	GO:0006952
	Gabi3768g00008	1062	SUPERFAMILY	Toll/Interleukin receptor TIR domain	7	159	IPR035897	-
	Gabi3768g00008	1062	Gene3D	-	352	436	IPR042197	-
	Gabi3768g00008	1062	Pfam	NB-ARC domain	201	432	IPR002182	GO:0043531
	Gabi3768g00008	1062	SUPERFAMILY	"Winged helix" DNA-binding domain	422	529	IPR036390	-
	Gabi3768g00008	1062	SUPERFAMILY	L domain-like	548	900	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3768g00008	Gabi-Chr3768	228058	231796	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3768g00008	11	754	WRKY Transcription Factor Family	AT4G12020	29.793	3.57e-74	267

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3768g00008	-		-	gmx:100780257	1300.03