Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3768g00004 ATGACAGGAGAGGCAGTGAATCCAAAAGCGTACCCTTTGGCCGATGCACAACTCACACTAACAATACTGGATCTTGTTCAACAAGCTGCCAACTACAAGCAGCTCAAAAAGGGTGCTAATGAAGCGACCAAGACACTGAACAGAGGCATTTCTGAGTTCATTGTGATGGCAGCAGACGCTGAGCCTCTTGAGATTCTTCTCCATCTTCCTTTACTTGCTGAGGATAAGAATGTTCCCTATGTGTTCGTCCCATCAAAACAAGCACTTGGACGAGCATGTGGAGTCACCCGGCCAGTCATTTCATGTTCTGTGACAACTAATGAGGGAAGTCAATTGAAATCCCAAATACAGCAATTAAAGGATGCTATTGAAAAGCTATTAATCTGA 387 0.4419 MTGEAVNPKAYPLADAQLTLTILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVISCSVTTNEGSQLKSQIQQLKDAIEKLLI 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3768g00004 128 PRINTS High mobility group-like nuclear protein signature 8 21 IPR002415 GO:0003723|GO:0005730
Gabi3768g00004 128 PRINTS High mobility group-like nuclear protein signature 38 48 IPR002415 GO:0003723|GO:0005730
Gabi3768g00004 128 PRINTS High mobility group-like nuclear protein signature 21 36 IPR002415 GO:0003723|GO:0005730
Gabi3768g00004 128 PRINTS High mobility group-like nuclear protein signature 82 94 IPR002415 GO:0003723|GO:0005730
Gabi3768g00004 128 Gene3D - 1 128 IPR029064 -
Gabi3768g00004 128 SUPERFAMILY L30e-like 6 126 IPR029064 -
Gabi3768g00004 128 CDD SNU13 7 128 - -
Gabi3768g00004 128 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 4 125 - -
Gabi3768g00004 128 PRINTS Ribosomal protein L7A/RS6 family signature 70 80 IPR018492 -
Gabi3768g00004 128 PRINTS Ribosomal protein L7A/RS6 family signature 80 94 IPR018492 -
Gabi3768g00004 128 PRINTS Ribosomal protein L7A/RS6 family signature 35 49 IPR018492 -
Gabi3768g00004 128 PRINTS Ribosomal protein L7A/RS6 family signature 54 67 IPR018492 -
Gabi3768g00004 128 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 23 111 IPR004038 -
Gabi3768g00004 128 FunFam NHP2-like protein 1 homolog 1 128 - -
Gabi3768g00004 128 ProSitePatterns Ribosomal protein L7Ae signature. 73 90 IPR004037 GO:0042254|GO:1990904
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3768g00004 Gabi-Chr3768 136818 138940 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3768g00004 35 124 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 28.889 2.19e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3768g00004 K12845 - rvl:131320233 234.958