Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3765g00026 ATGGAGTGGAATGGGAGCACAAGAGGGTTTGTTCCTAGAGAAGAGTCTTCCTTAAGCTTCATCTACAACTATAACTACAACCCATATCCAGGAATGGAAGTGAAACAACAAGCATTGTCCGAGACACCTCCAGCAATAATGGAAAAAATGAACTGTGGGAACTATGAGAAGAAGAAGCGACTAACAAGTGAGCAACTTGACTCACTGGAGAGTAGTTTCCAGAAGGAGATAAAGTTGGACCATGATAGGAAGATGAAGCTTTCCAAAGAGTTAGGGCTCCAGCCTCGCCAGATTGCTGTTTGGTTCCAAAATAGACGTGCAAGGTGGAAAACCAAGCAACTTGAACACTTGTACGATTCACTTAAACAGGAATTTGATGTCATATGCAAAGAAAAACAGAAGCTTCAGGGAGAGGTTATGCAGTTGCAGGCTATGCTGAGAGACCAAGCTTCGAGAACACAAGTATCAACAGGATATACAGAAATCTCTGGAGAAGAAACAGTAGAAAGCACATCAGAGGCTCTGCGTTGCTCCAACAAGTCACATGGAACGCTTCATCATCAGCAGATTATTGAAGAGGGAATCTGTTCTTTCACTTTGGAGGATTATAACACAGTTCCTGTAATATTGCCTAACTGGCCTGCTGGTGTTCCTTATTATCCTTAA 666 0.4249 MEWNGSTRGFVPREESSLSFIYNYNYNPYPGMEVKQQALSETPPAIMEKMNCGNYEKKKRLTSEQLDSLESSFQKEIKLDHDRKMKLSKELGLQPRQIAVWFQNRRARWKTKQLEHLYDSLKQEFDVICKEKQKLQGEVMQLQAMLRDQASRTQVSTGYTEISGEETVESTSEALRCSNKSHGTLHHQQIIEEGICSFTLEDYNTVPVILPNWPAGVPYYP 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3765g00026 221 Gene3D - 51 117 - -
Gabi3765g00026 221 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Gabi3765g00026 221 FunFam Putative homeobox-leucine zipper protein ATHB-51 54 117 - -
Gabi3765g00026 221 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Gabi3765g00026 221 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Gabi3765g00026 221 Coils Coil 104 152 - -
Gabi3765g00026 221 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Gabi3765g00026 221 SUPERFAMILY Homeodomain-like 48 114 IPR009057 -
Gabi3765g00026 221 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Gabi3765g00026 221 CDD homeodomain 57 113 IPR001356 GO:0003677
Gabi3765g00026 221 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 48 181 IPR045224 GO:0003700
Gabi3765g00026 221 SMART HOX_1 56 116 IPR001356 GO:0003677
Gabi3765g00026 221 Pfam Homeobox associated leucine zipper 112 146 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3765g00026 Gabi-Chr3765 478911 480656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3765g00026 1 142 Homeobox Transcription Factor Family AT5G03790 51.235 1.06e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi3765g00026 Homeodomain 3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3765g00026 - - gmx:100778007 354.369