LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3765g00023	ATGGGGGACAAGCACGAAGACGACAGCAGCGATTTCACGTCCGAGGACGAAGGCACCGAGGATTACCGACGTGGCGGTTACCACGCCGTTCGAATCGGCGACACCTTCAACGGTGGTCGCTACATCGTTCAGAGCAAGCTCGGTTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACACCCAACATTCTAGATATGTGGCTTTGAAAGTTCAAAAGAGTGCTCAGCATTACACTGAGGCAGCTATGGATGAGATAACGATTTTGCAACAGATTGCAGAGGGAGACCCGGATGATAAAAAATGTGTGGTGAAGCTTTTGGACCATTTCAAGCATTCTGGTCCAAATGGACAGCATGTTTGCATGGTATTTGAATACCTTGGGGATAATCTTTTAACTCTTATTAAGTATTCTGATTATCGCGGAATGCCTATCAACATGGTTAAAGAGATATGCTTTCATGTTCTGGTTGGATTGGATTACTTGCATAAGCAGCTTTCTATCATACATACTGACTTGAAACCCGAAAACATCCTCCTCTTGTCGGTGATAGATCCATCTAAGGATCCTAGAAAGTCCGGTGCTTCTCTTATTCTTCCTAATACTAAAGATAAGACGGTACTGGAGTCAGGGGCTGCGAAAGACACGAAAGCATCGAATGGAGATTTGATTACGAATCATAAAAAAAAGATTAAAAGAAAAGCGAAGCAGGCAGCTAGTGGATGCTTTGAGAAGGAAGCTTCTGAAGGAGTTAAAGGTTATCCTGAAACCTCTGGTGCTCTGCTGGCATCAATTGATCTCAAGTGCAAGTTAGTTGACTTTGGAAATGCTTGCTGGACTTATAAGCAGTTTACAAATGATATCCAAACAAGACAATATCGGTGCCCAGAGGTGATCCTTGGATCAAAATATTCCATATCTGCAGATCTTTGGTCCTTTGCTTGCATTTGTTTTGAGCTTGCAACTGGAGATGTGTTATTTGATCCTCACAGTGGTGATAACTTTGACAGGGATGAGGACCATTTAGCATTAATGATGGAACTTCTTGGAATGATGCCACGTAAGATTGCACTAGGGGGCCGATATTCCCGTGATTTCTTCAATAGATATGGTGATTTGAGGCACATCCGACGGTTGCGATTCTGGCCCTTGAATAAAGTCCTCATGGAGAAGTATGATTTCAGTGAGAAAGATGCAAATGACATGACTGACTTTTTGGTTCCTATCCTTGACTTTGTTCCTGAGAAACGGCCTACGGCTGGTCAGTGCCTTCTTCATCCATGGATCGATGCAGGTCCACGCCTTTTGGAGCCATCTGTGCCTTCTTCTACTCACAACCCTGCTGCTGAAACTGGTATTTCGGACCAGAAGAAAAGGGACAAAGATGATAGGGAGGCCATGGAGGCAGGAATGGGAAATATTGCTATCAATTCAGATTCTAAACCACTCATATATTCTCCATCTAAGAAGGCCTTCCAAGGCAGCCACAAGTAG	1494	0.4431	MGDKHEDDSSDFTSEDEGTEDYRRGGYHAVRIGDTFNGGRYIVQSKLGWGHFSTVWLAWDTQHSRYVALKVQKSAQHYTEAAMDEITILQQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGMPINMVKEICFHVLVGLDYLHKQLSIIHTDLKPENILLLSVIDPSKDPRKSGASLILPNTKDKTVLESGAAKDTKASNGDLITNHKKKIKRKAKQAASGCFEKEASEGVKGYPETSGALLASIDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSISADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYDFSEKDANDMTDFLVPILDFVPEKRPTAGQCLLHPWIDAGPRLLEPSVPSSTHNPAAETGISDQKKRDKDDREAMEAGMGNIAINSDSKPLIYSPSKKAFQGSHK	497

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3765g00023	497	SMART	serkin_6	41	429	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3765g00023	497	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	168	180	IPR008271	GO:0004672\|GO:0006468
	Gabi3765g00023	497	FunFam	CMGC/SRPK protein kinase	27	126	-	-
	Gabi3765g00023	497	CDD	STKc_SRPK	30	429	-	-
	Gabi3765g00023	497	MobiDBLite	consensus disorder prediction	1	21	-	-
	Gabi3765g00023	497	PANTHER	PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED	9	246	-	-
	Gabi3765g00023	497	Gene3D	Phosphorylase Kinase; domain 1	27	126	-	-
	Gabi3765g00023	497	Gene3D	Transferase(Phosphotransferase) domain 1	95	429	-	-
	Gabi3765g00023	497	ProSiteProfiles	Protein kinase domain profile.	41	429	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3765g00023	497	Pfam	Protein kinase domain	42	180	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3765g00023	497	Pfam	Protein kinase domain	265	429	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3765g00023	497	MobiDBLite	consensus disorder prediction	436	497	-	-
	Gabi3765g00023	497	MobiDBLite	consensus disorder prediction	452	468	-	-
	Gabi3765g00023	497	ProSitePatterns	Protein kinases ATP-binding region signature.	47	70	IPR017441	GO:0005524
	Gabi3765g00023	497	SUPERFAMILY	Protein kinase-like (PK-like)	36	442	IPR011009	-
	Gabi3765g00023	497	FunFam	Serine/threonine-protein kinase SRPK-like protein	260	429	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3765g00023	Gabi-Chr3765	454031	462884	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3765g00023	8	481	EF-hand Containing Proteins	AT5G22840	67.057	0.0	707

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_SRPK	Gabi3765g00023		Pkinase	3.7e-19	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3765g00023	K08832		-	bvg:104898532	795.423