LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3765g00022	ATGGGGGACAAGCACGAAGACGACAGCAGCGATTTCACGTCCGAGGACGAAGGCACCGAGGATTACCGACGTGGCGGTTACCACGCCGTTCGAATCGGCGACACCTTCAACGGTGGTCGCTACATCGTTCAGAGCAAGCTCGGTTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACACCCAACATTCTAGATATGTGGCTTTGAAAGTTCAAAAGAGTGCTCAGCATTACACTGAGGCAGCTATGGATGAGATAACGATTTTGCAACAGATTGCAGAGGGAGACCCGGATGATAAAAAATGTGTGGTGAAGCTTTTGGACCATTTCAAGCATTCTGGTCCAAATGGACAGCATGTTTGCATGGTATTTGAATACCTTGGGGATAATCTTTTAACTCTTATTAAGTATTCTGATTATCGCGGAATGCCTATCAACATGGTTAAAGAGATATGCTTTCATGTTCTGGTTGGATTGGATTACTTGCATAAGCAGCTTTCTATCATACATACTGACTTGAAACCCGAAAACATCCTCCTCTTGTCGGTGATAGATCCATCTAAGGATCCTAGAAAGTCCGGTGCTTCTCTTATTCTTCCTAATACTAAAGATAAGACGGTACTGGAGTCAGGGGCTGCGAAAGACACGAAAGCATCGAATGGAGATTTGATTACGAATCATAAAAAAAAGATTAAAAGAAAAGCGAAGCAGGCAGCTAGTGGATGCTTTGAGAAGGAAGCTTCTGAAGGACAGGGTAACAAAAGAGGAAGCCGCTCAATGAGACAGAAGCTGCTGGCATCAATTGATCTCAAGTGCAAGTTAGTTGACTTTGGAAATGCTTGCTGGACTTATAAGCAGTTTACAAATGATATCCAAACAAGACAATATCGGTGCCCAGAGGTGATCCTTGGATCAAAATATTCCATATCTGCAGATCTTTGGTCCTTTGCTTGCATTTGTTTTGAGCTTGCAACTGGAGATGTGTTATTTGATCCTCACAGTGGTGATAACTTTGACAGGGATGAGGACCATTTAGCATTAATGATGGAACTTCTTGGAATGATGCCACGTAAGATTGCACTAGGGGGCCGATATTCCCGTGATTTCTTCAATAGATATGGTGATTTGAGGCACATCCGACGGTTGCGATTCTGGCCCTTGAATAAAGTCCTCATGGAGAAGTATGATTTCAGTGAGAAAGATGCAAATGACATGACTGACTTTTTGGTTCCTATCCTTGACTTTGTTCCTGAGAAACGGCCTACGGCTGGTCAGTGCCTTCTTCATCCATGGATCGATGCAGGTCCACGCCTTTTGGAGCCATCTGTGCCTTCTTCTACTCACAACCCTGCTGCTGAAACTGGTATTTCGGACCAGAAGAAAAGGGACAAAGATGATAGGGAGGCCATGGAGGCAGGAATGGGAAATATTGCTATCAATTCAGATTCTAAACCACTCATATATTCTCCATCTAAGAAGGCCTTCCAAGGCAGCCACAAGTAG	1503	0.4444	MGDKHEDDSSDFTSEDEGTEDYRRGGYHAVRIGDTFNGGRYIVQSKLGWGHFSTVWLAWDTQHSRYVALKVQKSAQHYTEAAMDEITILQQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGMPINMVKEICFHVLVGLDYLHKQLSIIHTDLKPENILLLSVIDPSKDPRKSGASLILPNTKDKTVLESGAAKDTKASNGDLITNHKKKIKRKAKQAASGCFEKEASEGQGNKRGSRSMRQKLLASIDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSISADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYDFSEKDANDMTDFLVPILDFVPEKRPTAGQCLLHPWIDAGPRLLEPSVPSSTHNPAAETGISDQKKRDKDDREAMEAGMGNIAINSDSKPLIYSPSKKAFQGSHK	500

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3765g00022	500	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	168	180	IPR008271	GO:0004672\|GO:0006468
	Gabi3765g00022	500	CDD	STKc_SRPK	30	432	-	-
	Gabi3765g00022	500	MobiDBLite	consensus disorder prediction	1	21	-	-
	Gabi3765g00022	500	MobiDBLite	consensus disorder prediction	455	471	-	-
	Gabi3765g00022	500	Pfam	Protein kinase domain	42	180	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3765g00022	500	Pfam	Protein kinase domain	267	432	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3765g00022	500	SUPERFAMILY	Protein kinase-like (PK-like)	36	445	IPR011009	-
	Gabi3765g00022	500	ProSiteProfiles	Protein kinase domain profile.	41	432	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3765g00022	500	FunFam	Serine/threonine-protein kinase SRPK-like protein	262	432	-	-
	Gabi3765g00022	500	Gene3D	Transferase(Phosphotransferase) domain 1	95	432	-	-
	Gabi3765g00022	500	FunFam	CMGC/SRPK protein kinase	27	126	-	-
	Gabi3765g00022	500	ProSitePatterns	Protein kinases ATP-binding region signature.	47	70	IPR017441	GO:0005524
	Gabi3765g00022	500	MobiDBLite	consensus disorder prediction	439	500	-	-
	Gabi3765g00022	500	PANTHER	PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED	9	247	-	-
	Gabi3765g00022	500	SMART	serkin_6	41	432	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3765g00022	500	Gene3D	Phosphorylase Kinase; domain 1	27	126	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3765g00022	Gabi-Chr3765	454031	462884	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3765g00022	8	484	EF-hand Containing Proteins	AT5G22840	68.031	0.0	724

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_SRPK	Gabi3765g00022		Pkinase	3.3e-19	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3765g00022	K08832		-	gmx:100810777	910.212