Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3765g00013 ATGGCAGAACGATCCACCGCCGACACCTCCTCCGCCAGCGATGCTCCTCCGCCCTCGCTGGCGCCGGCTTCCTCGCCGAAGAGCTGGGCCGACGAAGCAGACGAAGAAACCAACGCAACGCCGAGCTCCGAGACAGCAACCTCGTCGCTCAACGTCGACGGATTAACGATCGACGAGAACAAGAAGCCTTCTCCAAAGTTCTTGGACGAGCCTGAAGACTCCAACATCCAAGCGGTTTCGTCCGGCGACACTCCGTACACGTCAGCTACCACCTTCGAAGAATTGAATCTCTCAACGGAGCTTTTGAAGGGACTGTACGTGGAGATGAAGTTCCAGAAACCTAGTAAGATCCAAGCCATAACCTTGCCTATGATCTTGAATCCTCCGAATAGGGATTTGATCGCACAGGCGCATAACGGTTCCGGAAAAACCACGTGTTTCGTTCTTGGTATGCTTAGTCGAGTTGATCCAAAGTTGCAGGCTCCTCAAGCTTTCTGCATTTGCCCAACCAGGGAGTTGGCTATTCAGAATACTGAAGTTCTCCGAAAGATGGGAAAGTACACGGGGATTAGCTCAGAATGTGCTATACCAGCAGACAGTAGAGATGCTTTGCCGATAGCGAAACGGGCACCGATTATGGCTCAAGTGGTTATTGGGACCCCTGGCACGATTAATAAGTGGATGAATTATAAGAAACTTGGGGTGACAAGGTTGAAGATTCTTGTTTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGATTTAAAGATGATTCCCTGAGGATAATGAAAGGAATAGAAAAATTCAATTCTAACTGTCAGGTTCTTCTGTTTTCTGCTACATTCAATGACATTGTCAAGAATTTTGTTTCGAGGACAGTTAAGCAGGATCATAATAAACTTTTTGTGAAGAAAGAAGAACTATCTTTAGATGCTGTAAAGCAATATAAAGTGTATTGTCCTGATGAACTCTCTAAGATCGAAGTGATAAAAGATTACATACTCGAAATAGGAGAGAATGTGGGGCAAACTATAATATTTGTGCGCACAAGAAATAGTGCAAAAATGTTACATAAATCACTTGTTGATTTGGGCTACGAGGTTACTTCTATACAAGGCGCTCTTGGGAATGAAGAGAGAGACAAGGTTGTCAAGGAATTCAGAGATGGTTTGACTCAGGTTCTTATATCAACTGATGTTCTTGCCCGTGGCTTTGATCAGCAACAGGTTAATCTGGTTATCAACTATGATCTTCCAGTGAAATATACTGCTGAGTATACCCGTGAACCTGAGCCTGATTATGAAATTTATTTGCATAGGGTTGGTAGGGCTGGACGTTTCGGGCGCAAGGGGGCTGTATTTAACCTGATATGTGATCAAAGGGATGAAAAGATCATGTCCAAGATTGAGAACCATTTTGGCACCCATGTTTCTGAGGTGCAAGAAAAAAGTGTTGAAAACTATAAAGGGGCTCTTAAAGAGGCCGGATTACTGAGGTGA 1500 0.4467 MAERSTADTSSASDAPPPSLAPASSPKSWADEADEETNATPSSETATSSLNVDGLTIDENKKPSPKFLDEPEDSNIQAVSSGDTPYTSATTFEELNLSTELLKGLYVEMKFQKPSKIQAITLPMILNPPNRDLIAQAHNGSGKTTCFVLGMLSRVDPKLQAPQAFCICPTRELAIQNTEVLRKMGKYTGISSECAIPADSRDALPIAKRAPIMAQVVIGTPGTINKWMNYKKLGVTRLKILVFDEADQMLAEDGFKDDSLRIMKGIEKFNSNCQVLLFSATFNDIVKNFVSRTVKQDHNKLFVKKEELSLDAVKQYKVYCPDELSKIEVIKDYILEIGENVGQTIIFVRTRNSAKMLHKSLVDLGYEVTSIQGALGNEERDKVVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKYTAEYTREPEPDYEIYLHRVGRAGRFGRKGAVFNLICDQRDEKIMSKIENHFGTHVSEVQEKSVENYKGALKEAGLLR 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3765g00013 499 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 124 300 IPR014001 -
Gabi3765g00013 499 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 329 496 IPR001650 -
Gabi3765g00013 499 MobiDBLite consensus disorder prediction 35 55 - -
Gabi3765g00013 499 Pfam DEAD/DEAH box helicase 116 288 IPR011545 GO:0003676|GO:0005524
Gabi3765g00013 499 CDD SF2_C_DEAD 313 457 - -
Gabi3765g00013 499 CDD DEADc_DDX19_DDX25 97 296 - -
Gabi3765g00013 499 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 90 119 IPR014014 GO:0003724
Gabi3765g00013 499 Pfam Helicase conserved C-terminal domain 326 448 IPR001650 -
Gabi3765g00013 499 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 52 466 - -
Gabi3765g00013 499 SMART ultradead3 110 316 IPR014001 -
Gabi3765g00013 499 MobiDBLite consensus disorder prediction 1 18 - -
Gabi3765g00013 499 MobiDBLite consensus disorder prediction 1 87 - -
Gabi3765g00013 499 Gene3D - 310 492 IPR027417 -
Gabi3765g00013 499 Gene3D - 69 307 IPR027417 -
Gabi3765g00013 499 SMART helicmild6 355 448 IPR001650 -
Gabi3765g00013 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 465 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3765g00013 Gabi-Chr3765 251288 255900 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3765g00013 91 480 Eukaryotic Initiation Factors Gene Family AT1G72730 35.696 2.14e-68 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3765g00013 K18655 - gmx:100778091 756.903