Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3765g00004 ATGGAAGCCGCGAATCCAGCACTCGAATCCACGATTAATTTGCGGGATTCTGATAACAGCGGCACCAAGATGCAGCATCAGCAGATAGCTGACGTGGCGAACGACTACATCGTTTACACTCGACGAAAGAGGACCCTCCATTCCGAGAATGAGAAATCCAAGAGGCTCAAAACCTCCGAAGATTGTCTTAACGAAGAAATTAAAGTGGAAAACCAAGTGTTAGGGGAAGGTGGCTCTTCCAGCGAGGTTGATCATGTGATTCTCAACAATGGTGATGAGGCGGTGCGTAACGACGTCGTTTTCAGGACGTTCGGGCGGGATACGCGATCGGCATTGAAGCCCAAGGTTGAGTCAGAATCAGAAGATGCAAATGTTAAAGCATTAACCAGTGAGAAGAGCAAGTTGGAATTGAAGATGTCAAAGAAGGTCATCGTGGTAAACAAGAAGCCCGTGACCGTCAAGGAGCTCTTCGAGACTGGTTTGCTTGATGGGGTTCCAGTTGTTTACGTGGGTTGCAAGAAGGATTCAACTTCAGGATTGCGGGGTGTAATTACAGATGGGGGGATATTATGTTCATGTTGTCTGTGCAATGGACGCCAGGTTATTCCACCTTCTCAATTTGAGATTCATGCTTGCCAAACATATAAGAGGGCAGCACAGTATATTTGCCTTGAAAATGGGAAGAGCCTTCTTGAACTATTGAGGGCATGTAGGGCAGCTCCCCTACATACTTTGGAGGCGACTATTCTAAATTTTGTTTGTTCTCTGCCTGAAGAAAAATATTTTACTTGCAAAAGTTGCAAAGGGTGTTTCCCTTCTTCAAGTGTGGAAAGAGTGGGACTTACATGTCATTCTTGCGTGGAATCAAGGAAATCTGAAGACAGTTCTATTCATGCAGTTGGCAAAAGAGTCAGGTCCTCACGACCAGTATTGTGTTCCAGTACATCCTGTACTTCTGAACTGTGCATCTCTTCACAATCTAAGAGGCACTCGAAGACAAGAACAAAGTCATCAAAGCGGGTTAGCAGCTCAAATTCTTCCAAGTGTGCTTCTGTGCCTATTCTATTCCGCAGGAAAAATTTGTGCAGCATGGAAACAGAGTCATCAAAACTGTCAGTAAAATTGAAGACTGCCCCATTTACTTCAAATTCAAAGTGTTTATCTCCACAAAATAAGAGTGCGTGGAGGATCACTAAAAAGTATCAGCGATTGCATAAATTAATTTTTGAAGATGAGGGATTGCCTGATGGAGCTGAAGTTGCTTATTATGCACGTGGACAGAAATTACTTGAGGGTATAAAAAGGCGCTCTGGAATTGTTTGTCGATGTTGCAACACTGAGATTAGCCCCTCACAGTTTGAGGTCCATGCAGGGTGGGCTTCTCGTAGGAAACCTTACGCATACATCTACACGTCGAATGGGGTCTCTCTCCATGAGTTAGCAATATTTCTCTCGAAAGATCGCAAATACACTGCAAAATATAATGATGATGTATGCATTGTTTGTTGGGATGGCGGAAATCTGTTGCTCTGTGATGGATGCCCAAGGGCATTTCATAAAGAATGTGCATCTGTATCAAGTATTCCACGTGGTAACTGGTACTGTCAAATTTGCCAGCACATCTTCCCGAGAGAAAGCTGTGGGGCACTCAATCCTGATGCTGTTGCAGCTGGAAGGGTTGAAGGAGTTGATCCTATTGAACAGATTGCCAAGAGATGCATTCGCATAGTAAAAGACTTTGAAGCTGAGATTAGTGGATGTGCTTTATGTAGGGGTTCTGACTTCAGCATATCAGGATTTGGTCCACGCACTATAATAATCTGTGATCAGTGTGAAAAGGAATATCATGTTGGCTGTTTGAGGGATCATAAGATGGCATATTTGAAGGAGTTGCCGGAAGGGAATTGGCTTTGTTGCAATGATTGCACAAGAATACATTCTACTTTGGAGAACCTTCTGGTTAGGGGGGATGAGAGACTCCCTGAATCTCTTTTGGATGTTATAAAGAAAAAGCAAGAGGAAAGATGTTTAGAACCCCTTAACGAGATTGATGTAAGATGGAAACTTCTAAATGGCAAAATTGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTGTGTCAATGTTTCATGAATGCTTTGATCCTATAGTAGATGCAGCTACTGGACGTGACCTTATTCCGGCCATGGTTTATGGAAGGAATTTGCAGACTCAGGATTTTGGAGGAATGTATTGTGCATTATTAATGGTCAATTCATATGTGGTATCTGCGGGCATGCTTCGGATTTTTGGTAGCGATATTGCAGAACTTCCTCTAGTTGCAACGAGGAATAAGAACCGTGGAAAGGGCTACTTCCAAACACTGTTCTCGTGCATTGAGAGGCTGCTAGCTTTCTTGAATGTGAAGAACCTTGTGCTACCAGCTGCTGAAGAAGCAGAATCCATATGGACAGATAACTTTGGGTTTAGCAAGATGAAACCTGACGAGATTACCAACTACAGAAAAAACTACCATCAGATAATGGCATTCAAAGGTACAATTATGCTTCATAAAACGGTGCCTCAATGTCGGGTCATCAATACTCAATCATGA 2595 0.4312 MEAANPALESTINLRDSDNSGTKMQHQQIADVANDYIVYTRRKRTLHSENEKSKRLKTSEDCLNEEIKVENQVLGEGGSSSEVDHVILNNGDEAVRNDVVFRTFGRDTRSALKPKVESESEDANVKALTSEKSKLELKMSKKVIVVNKKPVTVKELFETGLLDGVPVVYVGCKKDSTSGLRGVITDGGILCSCCLCNGRQVIPPSQFEIHACQTYKRAAQYICLENGKSLLELLRACRAAPLHTLEATILNFVCSLPEEKYFTCKSCKGCFPSSSVERVGLTCHSCVESRKSEDSSIHAVGKRVRSSRPVLCSSTSCTSELCISSQSKRHSKTRTKSSKRVSSSNSSKCASVPILFRRKNLCSMETESSKLSVKLKTAPFTSNSKCLSPQNKSAWRITKKYQRLHKLIFEDEGLPDGAEVAYYARGQKLLEGIKRRSGIVCRCCNTEISPSQFEVHAGWASRRKPYAYIYTSNGVSLHELAIFLSKDRKYTAKYNDDVCIVCWDGGNLLLCDGCPRAFHKECASVSSIPRGNWYCQICQHIFPRESCGALNPDAVAAGRVEGVDPIEQIAKRCIRIVKDFEAEISGCALCRGSDFSISGFGPRTIIICDQCEKEYHVGCLRDHKMAYLKELPEGNWLCCNDCTRIHSTLENLLVRGDERLPESLLDVIKKKQEERCLEPLNEIDVRWKLLNGKIASPETRPLLLEAVSMFHECFDPIVDAATGRDLIPAMVYGRNLQTQDFGGMYCALLMVNSYVVSAGMLRIFGSDIAELPLVATRNKNRGKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAESIWTDNFGFSKMKPDEITNYRKNYHQIMAFKGTIMLHKTVPQCRVINTQS 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3765g00004 864 SUPERFAMILY FYVE/PHD zinc finger 485 540 IPR011011 -
Gabi3765g00004 864 SUPERFAMILY FYVE/PHD zinc finger 578 640 IPR011011 -
Gabi3765g00004 864 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 583 645 - -
Gabi3765g00004 864 ProSiteProfiles Zinc finger PHD-type profile. 496 541 IPR019787 -
Gabi3765g00004 864 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 485 562 - -
Gabi3765g00004 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 583 645 IPR013083 -
Gabi3765g00004 864 ProSitePatterns Zinc finger PHD-type signature. 499 538 IPR019786 -
Gabi3765g00004 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 484 573 IPR013083 -
Gabi3765g00004 864 MobiDBLite consensus disorder prediction 1 21 - -
Gabi3765g00004 864 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 737 827 IPR016181 -
Gabi3765g00004 864 SMART PHD_3 586 643 IPR001965 -
Gabi3765g00004 864 SMART PHD_3 498 539 IPR001965 -
Gabi3765g00004 864 PANTHER AUTOIMMUNE REGULATOR 97 853 - -
Gabi3765g00004 864 Pfam Tify domain binding domain 435 482 IPR032308 -
Gabi3765g00004 864 Pfam Tify domain binding domain 182 237 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3765g00004 Gabi-Chr3765 79659 92292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3765g00004 137 861 PHD Transcription Factor Family AT2G36720 50.464 0.0 772
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3765g00004 - - gmx:100816654 1219.91