LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi375g00003	ATGGAATTGACAAGACCTGGTTATGCGATTGTTTATGTCATTCTCCTTTGCGCGTTGGCCCTAGGGGGCTCAGAGGGAAAGAGAGGGAAGGACGAAGATTTTTCTAGCGATGATAAACAGGCAGAGAATGTGTGGAAACATTGTAGGAAAGAATTGATAGGGAGGGACAATGATGTTAAAGATTTTGACTTGCATCCACTGGAATGGAGCAGTGACATGAGGTCTATTCTTACAACAGAAAGTAACATGCACAAAGAAACCAAGTCTCTGTCTCCCCATATAAAAGAAAGAATTTTGGACTGCATAAGCACTCCTCCAGCTCCTGCTTCTGTAGAAAAAGAAGGCTCTAGAATTTTGTTGACAAAGCATTCTGAACCAACCTTTGGTTTGAGAAGTGGCCATGAAAGAAGTTTGATTGCTGAGTCACCACATAATGAGATGTCACCAAGCCCTGCTACTGTTCCATCCCCATTGGAATCACCAAGTCATGAACCAACTCCAAAAAGTTCCCCATCATCACCAACTCCTGATCCCCATGCTGTGGATTTACCACTCCCTCCAGATATGTTTGTGCCATTTCCACCACCACCACCACCTCCTCTACCTCATTCTCTTACTGGTGAAATTTTTCGACCTTTAGTATATGCACCTACCCCTTCACCTCCTAACAATGATGACAAAAAGCAAAAAACAATTATCTTAGCTTCCACAATATCAGGAATTATAATCTTGATAGGCTTGTCTCTCTGCTATCGTGAGGTCAGAAGCAACAAACTTGACAAAGATGACAGGCCTTTACTCATACTAAGCTCAAGTGATTATCCTAGAGGTTCACAGAAGGTTACTCGTTTGGGAAGCTCTAATAGGGAAGGATTTGGTATTAACAATGGAAAGAAACCTTCTAATGTTAGAAATTGGTCCATTAAAAAGGCTGAAGATAACAATACCTCAAAGGTTGAGACAACATCATTAGAAGGTAAGGGACAAATACCAGCACCTCCTAGTGGAAGACCAGCTCCTCCACCCCCAGGGCCGCCACCACCACCGCCTCCACAGCCACCAGCTCTTGCTCCTCGTCCCCCACAACCTCCAAGAGGTGCTCATCCTCCACCTGCTCCTCCTCCCAAACCAATGGCAGGTAGAAATCAACATACACCTCTTGGACCACTTCGTGCTAAACAGGGTAGTTCTGGTGAGGGTGATGCTCAAAAACCTAAACTAAAGCCATTTTTCTGGGATAAGGTTTCTGCAAAACCTGATCAATCAATGGTGTGGCATGAGATCAGTGCAGGTTCATTCCAGTTCAATGAGGAAATGATGGAGTCTTTATTTGGCTGCACCAACCAGAACAGAAATGAACGCAAAAAAGATTCACCATCTGTGGATACTTCAGTACATTATATTCAGATTATTGACCCTAAGAAAGCACAGAATTTATCAATTCTTTTACGAGCTCTGAATGTGACAACAGAAGAAGTTGTTGATGCTCTTAAAGAAGGTAACGAGATTCCTATCGAGCTCATCCAGACGTTGTTAAAGATGGCACCGACAGCTGAAGAGGAACTGAAGCTTAGATTATTCACAGGAGAACTTTCTCAACTTGGCGCAGCTGAGAGATTTCTCAAAGTCTTGGTTGACATCCCATTCGCTTTCAAACGCCTTGAATCTCTTATGTTCATGTTTACCCTTCAAGAAGAGACCTCAAGCATTAAGGACTCGTTTGCAACACTAGAGGTTGCTTGCAACAAACTCAGAAAAAGCAGGTTATTCTTAAAACTACTAGAAGCAGTTCTGAAAACTGGGAACCGCATGAATGATGGTACCTATCGTGGTGGTGCTCAAGCATTTAGGCTTGACACGCTTCTGAAACTATCAGATGTAAAAGGAACAGATGGCAAGACAACACTATTACACTTTGTTGTTCAGGAGATTATACGTTCTGAGGGGATAAGAGCTGTGCGCACAGAGAGAGCAAGCAGAAGCATTTCAAGTAGTATTGCAACAGAGGATTTTGAAGATGGCAGTGAAGAATCCGCAGAACACTATCGCAGCCTTGGCCTTCAGGTAGTTTCAGGTCTAAGCACTGAACTTGAGGATGTTAAAAAGGCAGCACTCATAGAAGGTGATGCACTGAGTGCTGCAGTGTCAAAACTTGGCTACTCATTGATAAAGGCTCAAGAGTTTCTGAACACAGACATGAAGAACCTTGAAGAAGACAGTGAGTTCCAACGTTGCTTGGAAAGGTTTGTGGAGAAAGCAAAAGAAGATGTGACATGGCTTGTGGAGGAAGAGAAGAGGATAATGGCTCTGGTTAAGAGCACCGCTGATTACTTCCATGGGAACGCAGGAAAAGATGAAGGGTTGCGTTTGTTTTTGACTGTGCGTGATTTCTTGATAATATTGGACAAGGTTTGCAAAGAGGTGAAGGACACAACGATCAAGTCATCAGCGAAGGGTTTATCTTGCAAGAAAGAGGCTCCATCAGTGCCATCTTCACCTGACACTCGTCAACATTCACCACCTTCTGATCTACATAGAAGACTATTTCCAGCAATTGCAGAGCGTAGAGTTGATTACTCTAGCTCTGATGATGAGGACTTTTCTCCATAG	2610	0.4333	MELTRPGYAIVYVILLCALALGGSEGKRGKDEDFSSDDKQAENVWKHCRKELIGRDNDVKDFDLHPLEWSSDMRSILTTESNMHKETKSLSPHIKERILDCISTPPAPASVEKEGSRILLTKHSEPTFGLRSGHERSLIAESPHNEMSPSPATVPSPLESPSHEPTPKSSPSSPTPDPHAVDLPLPPDMFVPFPPPPPPPLPHSLTGEIFRPLVYAPTPSPPNNDDKKQKTIILASTISGIIILIGLSLCYREVRSNKLDKDDRPLLILSSSDYPRGSQKVTRLGSSNREGFGINNGKKPSNVRNWSIKKAEDNNTSKVETTSLEGKGQIPAPPSGRPAPPPPGPPPPPPPQPPALAPRPPQPPRGAHPPPAPPPKPMAGRNQHTPLGPLRAKQGSSGEGDAQKPKLKPFFWDKVSAKPDQSMVWHEISAGSFQFNEEMMESLFGCTNQNRNERKKDSPSVDTSVHYIQIIDPKKAQNLSILLRALNVTTEEVVDALKEGNEIPIELIQTLLKMAPTAEEELKLRLFTGELSQLGAAERFLKVLVDIPFAFKRLESLMFMFTLQEETSSIKDSFATLEVACNKLRKSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFRLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGIRAVRTERASRSISSSIATEDFEDGSEESAEHYRSLGLQVVSGLSTELEDVKKAALIEGDALSAAVSKLGYSLIKAQEFLNTDMKNLEEDSEFQRCLERFVEKAKEDVTWLVEEEKRIMALVKSTADYFHGNAGKDEGLRLFLTVRDFLIILDKVCKEVKDTTIKSSAKGLSCKKEAPSVPSSPDTRQHSPPSDLHRRLFPAIAERRVDYSSSDDEDFSP	869

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi375g00003	869	MobiDBLite	consensus disorder prediction	154	205	-	-
	Gabi375g00003	869	SMART	it6_source	397	816	IPR015425	-
	Gabi375g00003	869	MobiDBLite	consensus disorder prediction	268	406	-	-
	Gabi375g00003	869	MobiDBLite	consensus disorder prediction	333	380	-	-
	Gabi375g00003	869	MobiDBLite	consensus disorder prediction	142	205	-	-
	Gabi375g00003	869	PRINTS	Proline rich extensin signature	149	161	-	-
	Gabi375g00003	869	PRINTS	Proline rich extensin signature	164	180	-	-
	Gabi375g00003	869	PRINTS	Proline rich extensin signature	329	354	-	-
	Gabi375g00003	869	PRINTS	Proline rich extensin signature	185	197	-	-
	Gabi375g00003	869	Gene3D	Formin, FH2 domain	404	828	IPR042201	-
	Gabi375g00003	869	MobiDBLite	consensus disorder prediction	819	846	-	-
	Gabi375g00003	869	MobiDBLite	consensus disorder prediction	272	310	-	-
	Gabi375g00003	869	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	341	812	-	-
	Gabi375g00003	869	PANTHER	FORMIN-RELATED	218	856	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Gabi375g00003	869	Pfam	Formin Homology 2 Domain	401	801	IPR015425	-
	Gabi375g00003	869	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	397	827	IPR015425	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi375g00003	Gabi-Chr375	73120	77966	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi375g00003	346	858	FH2 protein (formin) Gene Family	AT5G54650	59.538	0.0	572

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi375g00003	-		-	vvo:131606706	775.393