Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3756g00002 ATGGGAGTCCACGGTCTATGGGAATTACTCGCCCCCGTCGGTCGCCGCGTCTCCGTCGAGACTCTCGCCGGAAAAACACTCGCCATCGGTATTCCTTCAACCATTTCACCTTTTTTCCCCATTAATCGCATTAACTTCTTCTTTTCAGACGCGAGCATATGGATGGTGCAGTTTCTGAAGGCGATGCGTGACGAGAAGGGTGAAATGGTTCGCAACGCTCATCTGCTCGGGTTCTTCCGTCGGATTTGCAAGCTCTTGTTCCTCCGGACCAAGCCAGTCTTCGTCTTCGACGGCGGAACCCCAGCCCTCAAGCGCCGCACCGTGATCGCACGCCGCAGGCAGCGCGAGAACGCACAAGCCAAAGTACGCAAGACTGCAGAGAAATTGCTACTCAATCATTTAAAGGTATTGAAGTTGAAGGAAGTGGCTAGTGATATTAAGAATCAGAGGCTGAAGCAGAAGAATGATACTGAGGGTCAGAAAAAATCTGATCAGAAGGACTTTGTTGGTAGTGATATAGGAAGAAGTAATGTGAAAGAGCTAGATGAAATGCCTGCAGCTAAGGAGAACCCAAGTTTATCGCAGGCAACAATATTGACAAGTTGCAACCAGGAGGAGCTTGATGAAATGCTGGCAGCATCTATAGCTGCAGAGGAAAAAGGAAGACTGGCCAGAAAAGGAGTGGAGTCTACTCTTATTAGGCCTATAGAGGAGGAATGTGGTGCGGATGAAGAAATGATACTGTCATCAGTCAACACGGAAGTTGATATAGCTGTGTTAGCTGCTTTGCCACAGTCAATGCAACTTGATATTCTTGCGCAGCTTAAAGGAAAGAAAGCAGAAGAACTAATGAAAGAAGTTGACAACCAGAAACAGCATGAGGTCAATGATCTGGGCAAGGGTAAGGGGATTCTGTTCTCTGAAACTGATGTGATAGGGTGTAGCTCAAGTTGTGACAATCAAGATAAAATTGATGAAATGTTAGCTGCGTCTATTGCTGTGGAGGAAAATGTGATGTTAGTAAATAATGCATCAACTTCTCTTGGGGCTTCAACCATCGAGGAAGAGGATGGTGACTATGACGAAGATGAAGAGATGATACTGCCAGCAATGCACGGTGAAGTTGATCCAGCTGTTCTAGCCTCTTTGCCTCCATCAATGCAACTGGATCTCCTTGTTCAGATGAGAGAGCGATTGATTGCAGAGAACAGACATAAGTATCAGAAAGTCAAGAAGGATCCTGCAAAATTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCCGACGGGAGATAGATCAAGTGCAGAAAGCTGCTGCTGGCAGAGGAGTTGGTGGTGTACAGACTTCGCGGATTGCATCTGAAGCCAACAGAGAGTATATATTCTCGTCATCTTTTACTGGTGACAAACAAGAACTTACCTCTACCAGATTAGAGAAAACTGAAAATACACAACAAAAAGAACGAGGAACACATCCTTCACGGAATTTTGCAAATAGCATTACAGCAGGCAATGATTCTAATACTTCAAGTGGATTGAATTGCAATCAACCTAGTGAGCCTGTTGATGAAAGTATTCAGACATATCTAGATGAGAGCGGTCGACTTCGAGTTAGTAGAATGAGAGCTATGGGAATGCGTATGACCCGTGATATACAAAGGAATTTGGACTTGATGAAGGAAATTGAGCAGGAAAGATCATATGCGAACAAGGCTGCTAATATTGGAACCGTGCTAAATGCAAAGAATAATGGTTCATCAGAAAGTTATGGGAACCAGCTTGTTGGTAAATCACGAGAGGTGAATGTTGACTTGGTTAAAGAGCGTGCGCAAAATGAGCAATCAATGCTTGACAGGGATACTTCTATACCGATATCCTTTGAATTTGATTGCAAGAATAAGTTTGTAAATGGTGAGGATGATATATTTTCCAGTTTAGTGGGAGGAAATTCAGTGGCAATCTATCTTGGTGATGATAGTGCAGCAAAAGAACAGCCTTCTGATTCTGATTCAGATTGTGATTGGGAAGAAGGAACTGTTGAAGGTAAGAATATAATTTTTCCTGGACATTTTAAGGTGGAATTGCAGTCTTCTGTTGCAGATGAGGATAATAATAATAATGAAAGTGAAGTAGAATGGGAGGAAGGAGATTGTGATGGCACTAAAAGCACCTTATTGTGTCAAGGTGATTCAGGAAAATCAGCATCTCGAGGGTGCTTGGAGGAGGAGTCTGATTTTCAGGAGGCAATAAGGAGAAGTCTTGAGAGTACAGGGAATGGGAAAATTAAATGCATGTCATCTATAGAATCTATAGATGAGCGTTCAAATGCATATGAGAACAAATTGGATCATGGATTAGAACATGCTGATAATCTGTGTTGTTCTGGCCCAATGGATTTAAATGATAATGTTGAACTCCTGAAAAATAAAAATATTCTGGGTGGTTCCACTTCGAATAGGGAAGATGATACTGAACAAAATGAGTTACATGAAATTGTTGATGGGGATAAAAAACATGATTATGTGGCTGGGAATAACTCACAAACATTCCATTTTCATGGAAGTCAGTCAAATTCATCTGCGACGTTTAGTTCCAATAACACGGAGATATTGACTGACAAACCTTGCAGACTGGATAAACACTCTCATTCTGAAGATTCAACTTCAGATGCAAATGTAACAATGAAGGATGAGGTCCCTATGGTTTCAGAGCAGTTATTGGATAATGGTAATGATGATGGTAAAGTGTCTTTCTATTGTAAGAATTCGCCCAAAGTTGATCTACTTGGTGTGACTGAAGAGAAAAAGAACTATATTAATGGATCTGAACCCATTAGTAGTTTTACGGACAATACCAAGCCTGCTATTCTTTCGATGGGGTCATCCTTGAAAGGATCAACAGAAGACCTTGATATCGAGCCAAAATTCCCTGGAGTGGACAATGGTGGAAATTTAAGTGAGGAAAGGAATAGTAACCTTGCCGAAGATGCAGTGAACATCATAGAAGATTTTCCTGCACGTGTAGATGAGGTTAGATTGGAGGAAGAAATGCAAATTCTTGGTCAAGAATATATCAATCTAGAAAATGAACAGAGGAAGCTTGAACGTAATGCAGAATCTGTAAACAGTGAGTTATTCACAGAATGTCAGGAACTGCTGCAAATGTTTGGCTTGCCATACATTATTGCTCCAATGGAAGCTGAAGCGCAGTGTGCTTACTTGGAGCTCGCGAAACTCGTTGATGGTGTTGTGACTGATGACTCTGATGTCCTTTTATTTGGGGCACGTAGCGTATACAAGAATATATTTGATGACCGCAAATATGTGGAGACATACTTCATGGAGGACATTGAGAAGGAGCTTGGATTGAGCAGAGAGAAATTAATACGCATGGCGCTACTTCTTGGGAGTGATTATACTGAAGGTGTAAGTGGGATTGGCATTGTTAATGCTATTGAGGTTGTAAATGCATTCCCTGAGGAAGATGGCCTTCTAAAGTTCCGGCAGTGGGTTGAGTCACCAGATCCTACCATCCTTGGAAGGTTGGATGCAAAAAGTGGATCCAATACCAGAAAGAAAAATAGTGAGTCTGCATCAGATCAGAACATCTCCCATGCTCAGGAGCAAAACAAGTCGCCGGATTACATCCAAGATATAAAGCAAACTTTCTTGGATAAGCATAGAAATGTTAGCAAGAATTGGCATATTCCATCTTCTTTTCCAAGTGAAACAGTTATATCTGCTTACTATTCTCCACATGTTGACAAGTCAACTGAGCCTTTCACTTGGGGAAAACCAGATCATCTTGTTCTTCGCAAATTGTGCTGGGAGAAATTTATGTGGACTAGCCAGAAAGCAGATGAATTGCTATTACCTGTTTTAAAGGAATATAACAAACATGAGACTCAACTGCGGTTGGAAGCATTTTATAGTTTCAATGAAAGATTTGCAAAAATTCGCAGCAAGAGAATTAAAAAAGCTGTAAAAGGAATTACTGGTAAGCAGCCATCGGATTTGATAGATCATTCTGCTGAGGACTTGTCCAAGGATAGGAAGAATGGGAAGGGAGGTCCTGTTGAACCTGGGGATAACAAATTGGAGCCTTCAAAGGGTACAGAGGAAAGTCTTGAAGCTAGGAAGAAATCAAAAATGAAACAGTCAAGGAAAAGGAAGAATGATGGGGGTACTGTTGCTAAGGCACAATCAAAGAAAAAGAAAATCACTGATGATCCTTCTGTGGTGGAGAATTTACAGCCGTGTATGCAGACAGAAGAAGAGCAATGTGATGGTAAGGCATTGATTTGGAATAGGAGCAGAGGTAGAGGAAGAGGAAGAGCTAGAGGTATGGGAGTAATAAGAGGAAGGGAGAAGGAAAGTCTTAGTATTCAATCACGTGAAACCTCATCAAGTAGTAGTGATACTGATGATCATGGACTAAGAGTGCATATTGATATGCCAGAAGTTCCAAAAGATTTGCGAAGGTCAATGCGATCTCGGAAAGCTGTCAACTATTCTTTCAAGGATGTTGAAGTTGAAGAAGCTGATGCTGATGATTCATTTGATGAGAGCAATCAGACATGCTTGCGTAAAGAGCCAAAAGAAGAAAAATTATCTTACATTCATGGAGCATGTAGAGATGGTGCAACTGATTTCAGCAGAGGGAAAGAAAGCAGTATACCTCTAAAGGAGACTAGAGACTCTCTCGAGTCAGAAGGTTGGTTTTGCACGGATGCTGGTGAAACTAGTCATCCAGGGACTGGCAATCGTGATAATTCCTTTGATCGTGACTCTTCTGATGGCTACCTTAAAATGGGAGGTGGATTTTGTTCTGATGATAGTGAGATAGGTAATAACCATAATGCAATTGATGATGTCAACACTGCTGCTACATTGGATTGTACTGCAGACATTCCTAGCTGTTCTGAATTTTTGGACGAAACTGACCATGATAAAAGTAGTTCAGATATATTATTTTCTGGCGCTGAAAAAGCTGAAAATGAGATACAGGATGAAGGGACGTCTTTTAAATTCAATAAAGAGACAAATAATGACCTCCTAAATGCTGGTAATCATTCTGACATGGGGGTTTTGACGCCAGAGATTGCTCATCACAATAGTGGAACCTCCGCGGGAGCTTTTAGTGCTATGCCCTTTTTGAGGAAAAAAAGGAAGAAGAACTGA 5190 0.4139 MGVHGLWELLAPVGRRVSVETLAGKTLAIGIPSTISPFFPINRINFFFSDASIWMVQFLKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKVRKTAEKLLLNHLKVLKLKEVASDIKNQRLKQKNDTEGQKKSDQKDFVGSDIGRSNVKELDEMPAAKENPSLSQATILTSCNQEELDEMLAASIAAEEKGRLARKGVESTLIRPIEEECGADEEMILSSVNTEVDIAVLAALPQSMQLDILAQLKGKKAEELMKEVDNQKQHEVNDLGKGKGILFSETDVIGCSSSCDNQDKIDEMLAASIAVEENVMLVNNASTSLGASTIEEEDGDYDEDEEMILPAMHGEVDPAVLASLPPSMQLDLLVQMRERLIAENRHKYQKVKKDPAKFSELQIQAYLKTVAFRREIDQVQKAAAGRGVGGVQTSRIASEANREYIFSSSFTGDKQELTSTRLEKTENTQQKERGTHPSRNFANSITAGNDSNTSSGLNCNQPSEPVDESIQTYLDESGRLRVSRMRAMGMRMTRDIQRNLDLMKEIEQERSYANKAANIGTVLNAKNNGSSESYGNQLVGKSREVNVDLVKERAQNEQSMLDRDTSIPISFEFDCKNKFVNGEDDIFSSLVGGNSVAIYLGDDSAAKEQPSDSDSDCDWEEGTVEGKNIIFPGHFKVELQSSVADEDNNNNESEVEWEEGDCDGTKSTLLCQGDSGKSASRGCLEEESDFQEAIRRSLESTGNGKIKCMSSIESIDERSNAYENKLDHGLEHADNLCCSGPMDLNDNVELLKNKNILGGSTSNREDDTEQNELHEIVDGDKKHDYVAGNNSQTFHFHGSQSNSSATFSSNNTEILTDKPCRLDKHSHSEDSTSDANVTMKDEVPMVSEQLLDNGNDDGKVSFYCKNSPKVDLLGVTEEKKNYINGSEPISSFTDNTKPAILSMGSSLKGSTEDLDIEPKFPGVDNGGNLSEERNSNLAEDAVNIIEDFPARVDEVRLEEEMQILGQEYINLENEQRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELAKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYFMEDIEKELGLSREKLIRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLLKFRQWVESPDPTILGRLDAKSGSNTRKKNSESASDQNISHAQEQNKSPDYIQDIKQTFLDKHRNVSKNWHIPSSFPSETVISAYYSPHVDKSTEPFTWGKPDHLVLRKLCWEKFMWTSQKADELLLPVLKEYNKHETQLRLEAFYSFNERFAKIRSKRIKKAVKGITGKQPSDLIDHSAEDLSKDRKNGKGGPVEPGDNKLEPSKGTEESLEARKKSKMKQSRKRKNDGGTVAKAQSKKKKITDDPSVVENLQPCMQTEEEQCDGKALIWNRSRGRGRGRARGMGVIRGREKESLSIQSRETSSSSSDTDDHGLRVHIDMPEVPKDLRRSMRSRKAVNYSFKDVEVEEADADDSFDESNQTCLRKEPKEEKLSYIHGACRDGATDFSRGKESSIPLKETRDSLESEGWFCTDAGETSHPGTGNRDNSFDRDSSDGYLKMGGGFCSDDSEIGNNHNAIDDVNTAATLDCTADIPSCSEFLDETDHDKSSSDILFSGAEKAENEIQDEGTSFKFNKETNNDLLNAGNHSDMGVLTPEIAHHNSGTSAGAFSAMPFLRKKRKKN 1729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3756g00002 1729 Pfam Ubiquitin binding region 374 399 IPR025527 -
Gabi3756g00002 1729 Pfam Ubiquitin binding region 252 274 IPR025527 -
Gabi3756g00002 1729 MobiDBLite consensus disorder prediction 150 169 - -
Gabi3756g00002 1729 Gene3D - 1126 1227 - -
Gabi3756g00002 1729 MobiDBLite consensus disorder prediction 476 492 - -
Gabi3756g00002 1729 MobiDBLite consensus disorder prediction 1369 1384 - -
Gabi3756g00002 1729 MobiDBLite consensus disorder prediction 1331 1416 - -
Gabi3756g00002 1729 CDD H3TH_XPG 1129 1259 - -
Gabi3756g00002 1729 ProSitePatterns XPG protein signature 1. 90 104 IPR019974 GO:0016788
Gabi3756g00002 1729 ProSitePatterns XPG protein signature 2. 1060 1074 IPR019974 GO:0016788
Gabi3756g00002 1729 SMART xpgineu 1057 1126 IPR006086 GO:0004518
Gabi3756g00002 1729 MobiDBLite consensus disorder prediction 1392 1414 - -
Gabi3756g00002 1729 SUPERFAMILY PIN domain-like 3 1141 IPR029060 -
Gabi3756g00002 1729 Pfam XPG I-region 1060 1141 IPR006086 GO:0004518
Gabi3756g00002 1729 MobiDBLite consensus disorder prediction 493 524 - -
Gabi3756g00002 1729 CDD PIN_XPG_RAD2 2 112 - -
Gabi3756g00002 1729 MobiDBLite consensus disorder prediction 475 524 - -
Gabi3756g00002 1729 Gene3D - 990 1125 - -
Gabi3756g00002 1729 SMART xpgn3 1 118 IPR006085 GO:0004518
Gabi3756g00002 1729 Coils Coil 1013 1047 - -
Gabi3756g00002 1729 MobiDBLite consensus disorder prediction 150 171 - -
Gabi3756g00002 1729 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 295 - -
Gabi3756g00002 1729 SMART HhH_4 1128 1161 IPR008918 GO:0003677|GO:0003824
Gabi3756g00002 1729 MobiDBLite consensus disorder prediction 1182 1214 - -
Gabi3756g00002 1729 MobiDBLite consensus disorder prediction 1440 1497 - -
Gabi3756g00002 1729 MobiDBLite consensus disorder prediction 1194 1214 - -
Gabi3756g00002 1729 Gene3D - 1 177 - -
Gabi3756g00002 1729 FunFam DNA repair protein UVH3 1005 1125 - -
Gabi3756g00002 1729 Pfam XPG N-terminal domain 50 117 IPR006085 GO:0004518
Gabi3756g00002 1729 MobiDBLite consensus disorder prediction 1342 1361 - -
Gabi3756g00002 1729 FunFam DNA repair protein UVH3 1126 1183 - -
Gabi3756g00002 1729 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1126 1321 IPR036279 -
Gabi3756g00002 1729 CDD PIN_XPG_RAD2 1043 1127 - -
Gabi3756g00002 1729 MobiDBLite consensus disorder prediction 1473 1497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3756g00002 Gabi-Chr3756 28139 45409 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3756g00002 1 120 Core DNA Replication Machinery Family AT5G26680 31.538 8.69e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3756g00002 K10846 - gmx:100820295 2352.01