Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3755g00076 ATGCAGCGCCACCATGTCTCCGCCGTGTCTTTTTTAATCTTATTCTTCTTCAGACTCATGCTAGTATGCGGTGAGGGACAACCTCAGAGCAGTGTCCTCGATCGACATTGGTATCCAGGAACCGCCACCTGGTACGGCGACCCGGAAGGAGACGGTAGCACTGGAGGAGCATGTGGGTATGGTAGCTTGGTGAACGTGAAACCATTCAGGGCAAGGGTAGGTGCAGTGGGGCCAGTATTGTTCATGAACGGGCAAGGGTGTGGTGCTTGCTATAAGGTGAAGTGCTTGGACCCCAGCATATGTTCGAAGCGAGCCGTGACGGTTATAATTACCGATGAGTGTCCTGGTTGCCCCTCCGACCGAACACACTTCGACCTTAGTGGCGCCGCCTTTGGCCACATGGCTGTTGCTGGCGAGAACGGTCAACTCAGGAACCGAGGTGAAATCCCAGTCATTTACCGAAGAACAACATGCGTGTATCCTGGAAAAAATATTGCCTTCCTTGTTAATGAAGGATCCACACCTTATTGGCTATCACTTCTGGTGGTGTTTGAGAATGGAGATGGGGACATTGCCTCCATGCATATACAAGAGGCAGGGTCTAGTGAGTGGATACAGATGAATCATCTATGGGGTGCAAATTGGTGCATTAATGGTGGACCTTTAAGAGGGCCTTTCTCTGTGAAGCTAACCACATCCACAGGAAGAAGCCTCACTGCCAAAGGTGTTATTCCAAGCAATTGGTCTCCAAAGGCCACTTATACTTCTCGCTTAAATTTCTTTCCTTAG 789 0.4994 MQRHHVSAVSFLILFFFRLMLVCGEGQPQSSVLDRHWYPGTATWYGDPEGDGSTGGACGYGSLVNVKPFRARVGAVGPVLFMNGQGCGACYKVKCLDPSICSKRAVTVIITDECPGCPSDRTHFDLSGAAFGHMAVAGENGQLRNRGEIPVIYRRTTCVYPGKNIAFLVNEGSTPYWLSLLVVFENGDGDIASMHIQEAGSSEWIQMNHLWGANWCINGGPLRGPFSVKLTTSTGRSLTAKGVIPSNWSPKATYTSRLNFFP 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3755g00076 262 Gene3D - 160 261 IPR036749 -
Gabi3755g00076 262 CDD DPBB_EXPB_N 37 158 - -
Gabi3755g00076 262 Pfam Lytic transglycolase 78 152 IPR009009 -
Gabi3755g00076 262 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Gabi3755g00076 262 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576
Gabi3755g00076 262 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576
Gabi3755g00076 262 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576
Gabi3755g00076 262 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Gabi3755g00076 262 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576
Gabi3755g00076 262 SUPERFAMILY Barwin-like endoglucanases 34 162 IPR036908 -
Gabi3755g00076 262 Pfam Expansin C-terminal domain 165 245 IPR007117 -
Gabi3755g00076 262 Gene3D - 23 158 IPR036908 -
Gabi3755g00076 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 163 IPR007112 -
Gabi3755g00076 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 256 IPR007117 -
Gabi3755g00076 262 PRINTS Major pollen allergen Lol pI signature 183 198 IPR005795 GO:0005576|GO:0019953
Gabi3755g00076 262 PRINTS Major pollen allergen Lol pI signature 232 249 IPR005795 GO:0005576|GO:0019953
Gabi3755g00076 262 PRINTS Major pollen allergen Lol pI signature 95 105 IPR005795 GO:0005576|GO:0019953
Gabi3755g00076 262 PRINTS Major pollen allergen Lol pI signature 135 150 IPR005795 GO:0005576|GO:0019953
Gabi3755g00076 262 PRINTS Major pollen allergen Lol pI signature 167 182 IPR005795 GO:0005576|GO:0019953
Gabi3755g00076 262 FunFam Expansin B3 24 159 - -
Gabi3755g00076 262 SUPERFAMILY PHL pollen allergen 163 256 IPR036749 -
Gabi3755g00076 262 PANTHER EXPANSIN-B3 15 260 - -
Gabi3755g00076 262 SMART dpbb_1 73 153 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3755g00076 Gabi-Chr3755 604796 607584 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3755g00076 32 218 Expansin Gene Family AT4G28250 66.310 5.66e-87 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3755g00076 K20628 - gmx:100780112 451.44