Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3755g00033 ATGAATTCTAGGTGCTTCCTTCCACCAGAGTCCTTGTTTAACTCAAGTAGTATGGTTTCATTTTCTTCAAATTCTGCAGCAGGAGAAGATAGAGTGGCTAGTGCTCCAAGTAGGCCTCCACGTGCCTCCCCACCTTCGTTTTTGGTTCGGATGGCCATGAGAATATCTAGAGCAAGATGGTTTACCTTCTTGAGAAGAGTATTTCATTACCAAAATGGATCAAGGTCCAGTCTTGGCTCTAATCCTTTCAATTCTAGCAATTGGATGATGCTGGAATTTATTGCTTTGATGGTTCAAATAACCATTACAACATTCACTTTAGCCATTTCAAAGAGGGAGAGACCCATTTGGCCTATGAGGATATGGATAGCTGGTTATGATATTGGTTGTGCTCTTAATCTGCTGCTACTTTATGGGCGCTACCGTCAAATTTATCTGACTCAAAGAGATGCTCTTAACCTTTCTGATATGGAACAACAGAGAAATAATGAAGAAACTAGTGTATACAGGACGTCGCACTTGATGAATAAATGCCGAACTTCACTTGAGCTTTTCTTCGCCATATGGTTTGTGATGGGCAATGTTTGGATTTTTGACTCACGTTTTGGATCTTTTCATCAAGCTCCAAAACTCCATGTGCTTTGCATCACCCTGCTTGCTTGGAATGCAATCTGCTACTCTTTCCCTTTCCTACTGTTTCTGTTGTTATGCTGTTGTGTGCCACTAATTAGCAGCCTCCTCGGGTACAACATGAACATGGCCTTTTCTGATAGAGGAGCATCTGATGATCAAATTTCACAACTTCCAAATTGGAGACATAAAGAAGCTCATACCAAGTTAGAGCTTGGCAATGACTCTAAAGGCAGTGAGAAATCGATCAATGAAGATTCAGAATGTTGCATTTGCTTAGCCAAGTACAAAGACAAAGAAGAAGTGAGACAATTGCCCTGTTCCCATATGTTCCACTTAAAATGTGTGGATCAATGGCTCAAAATTATGTCCTCCTGCCCTCTTTGCAAACAAGGTTTAGAAAGGGAGAAATAG 1044 0.409 MNSRCFLPPESLFNSSSMVSFSSNSAAGEDRVASAPSRPPRASPPSFLVRMAMRISRARWFTFLRRVFHYQNGSRSSLGSNPFNSSNWMMLEFIALMVQITITTFTLAISKRERPIWPMRIWIAGYDIGCALNLLLLYGRYRQIYLTQRDALNLSDMEQQRNNEETSVYRTSHLMNKCRTSLELFFAIWFVMGNVWIFDSRFGSFHQAPKLHVLCITLLAWNAICYSFPFLLFLLLCCCVPLISSLLGYNMNMAFSDRGASDDQISQLPNWRHKEAHTKLELGNDSKGSEKSINEDSECCICLAKYKDKEEVRQLPCSHMFHLKCVDQWLKIMSSCPLCKQGLEREK 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3755g00033 347 SUPERFAMILY RING/U-box 290 343 - -
Gabi3755g00033 347 ProSiteProfiles Zinc finger RING-type profile. 299 340 IPR001841 -
Gabi3755g00033 347 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 18 342 - -
Gabi3755g00033 347 Pfam Ring finger domain 298 340 IPR001841 -
Gabi3755g00033 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 345 IPR013083 -
Gabi3755g00033 347 SMART ring_2 299 339 IPR001841 -
Gabi3755g00033 347 CDD RING-H2_EL5-like 298 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3755g00033 Gabi-Chr3755 223131 226063 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3755g00033 39 343 C3H Transcription Factor Family AT4G26580 68.301 2.97e-147 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3755g00033 - - gmx:100813670 588.956