Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3755g00026 ATGATTTTTTCCCCCTCCACAATCCCAAAACACATCACCCTTTCTCTTCTCTCAACAATGTCTGGAAGCTTAATGAATCTGTCACTTTCTCCCAAAATCTTCTCCCTCACCTTGCTTCTCTTAATCAACTCTCTTTTCTTTTCATGTTGTTACTCCCTTAATGAACAAGGCCAAGCTCTTTTAGCATGGAAGAACAGTTTAAACAGTAGTTCAGATGCATTAGCATCATGGAATTCTTCAAACCCAAGCCCATGCAACTGGTTTGGGGTGCACTGCAACCTACAAGGCGAGGTGGTGGAGATAAACCTGAAATCAGTGAACTTGAAAGGTTCACTACCTTCAAATTTTCAACCTCTCAGGTCCTTGAAGATTCTTGTCCTCTCTTCAACCAACATCACAGGGAGGATTCCAAAAGAAATAGGAGACTATCAAGAGCTTATTTCCATTGATCTCAGTGGAAATTCTCTCTTGGGTGAAATCCCAGAAGAAATTTGCAGGCTAAGCAAATTGCAAAGTTTAGCTCTCCAGACAAACTTTCTTGAAGGCAGTATTCCATTCAACATAGGAAATTTATCAAGTCTTGTGAACTTGACACTCTATGACAATAAACTGAGTGGTGAAATTCCAAAGAGTATTGGCTCCTTAAGCAACCTTCAAGTATTCAGAACAGGAGGGAATGCAAACCTCGAAGGTGAGCTTCCATGGGACATTGGAAACTGCACCAACTTGGTCATGTTAGGCCTTGCAGAAACCAGCATTTCTGGGACTCTTCCTTCATCAATAGGGATGCTGAGAAGAATTCAGACAATAGCCATTTACACAACTCTTTTGTCAGGCTCTATCCCAGAAGAGATTGGGAATTGCAGTGAGTTGCAGAACCTGTACTTGTATCAGAACTCAATCTCTGGTTCAATCCCAAGTCAAATTGGAGAGCTCAACAAGCTTCAGAGTCTACTTTTATGGCAAAACAGCATAGTTGGTGCAATCCCAGAAGAGCTTGGAAGGTGCACAGAACTTCAAGTCATGGACTTGTCCGTAAATCTTCTCACAGGTAGCATTCCAAAAAGTTTTGGACAGCTATCAAATCTCCAAGGACTTCAACTGAGTGTTAATCAGCTTTCAGGCATTATACCTCATGAAATTTCAAACTGCACTTCTCTGACTCAACTGGAATTTGACAACAATGCTATTTCTGGCGAGATTCCTCATCTTATTGGCAACTTGAGAAGCTTGACTCTGTTCTATGCCTGGAAGAACAAGCTAAAAGGAAAAATCCCAGATAGTCTTTCAGAGTGCAAAGATCTTCAGGAACTTGATCTGTCTTACAACAGTTTAATAGGTCCAATACCCAAACAACTATTTGGGTTGAGGAATCTCACTAATCTGCTGCTTCTATCCAATGATTTGTCAGGCTTTATACCACCTGATATTGGTAACTGCACAAGTCTCTACAGGTTGAGGTTAAATCACAATAGACTTGCAGGTGCCATTCCATCTGACATTTCCAACTTGAAAAATTTGAACTTTTTGGATTTGAGCAGCAATCATCTTGTAGGGGAGACTCCCGCAACACTATCCAGATGCCAAGAACTTGAGTTTATGGACCTTCATTCAAATAGTCTCATTGGTTCAGTACCAGATAATCTTCCCAAAAGCCTGCAGTTAATAGACTTCTCAGACAACAGGCTAACAGGTGCACTGAATCATTCCATTGGTTCATTAACTGAATTAACAAAACTCTACTTGGGAAAGAATCAGCTCAGTGGAAGAATCCCAGCAGAGATCCTATCTTGCTCTAAGCTACAACTTCTAGACTTGGGAAGCAATAGTTTCTCTGGAGAAATTCCCAAGGAACTTGGTCAAATTGCTTCTCTAGAAATCTTTCTCAATCTTAGTTGTAACCAGTTTTCTGGTGAAATTCCACCCCAGTTTTCTAGTCTTAGCAAACTGGGAGTGCTTGATCTCTCCCACAACAAACTCTCAGGGAATTTAGATGCCCTTTCTGACCTTCAGAATCTTGTTTCCTTAAATGTTTCCTTCAATGCCTTCTCTGGAGAATTGCCTAATACCCCATTCTTCCGTAAACTCCCTCTCAGTGATTTCACTGCAAATGATGGTCTCTACATTGCCAGTGGTGTTGTAACTCCAGCTGACAGAATGGGATCCGAAGCTCACACCAGATTAACTACAAAGATCATAATTTCCATTCTCTTATGCAGCAGTGCAGTACTAGTATTGCTCATAATTCATGTCTTTGTTCGTGCTCATATTGTTAACAAAGTACTCATGGAAAATAACAGTTGGGTGATGACTTTGTATCACAAGTTTGAATTCTCCATTGATGACATTGTCTGGAATTTGACATCAGCCAATGTGATTGGCACTGGAAGCTCTGGAGTTGTGTACAAGGTAACAATTCCAAATGGCCAAACACTAGCAGTTAAAAAGATGTTTTCAACAGCAGAGTCTGGAGCATTCAATTCTGAAATTCAAACACTAGGTTCAATTAGACACAAGAACATCATCAAGCTCCTGGGTTGGGGATCCAATAAGAATTTGAAGCTGCTGTTTTATGACTACCTCCCTAGTGGAAGCCTGAGCTCATTAATTCATGGTTCAGGAAAGGGAAAAGCAGAATGGGAGACCAGACATGATGTTATATTAGGCGTGGCTAATGCACTTGCATATTTGCACCATGATTGTGTGCCTTCTATATTGCATGGAGATGTCAAAGCCATGAATGTGTTACTAGGTCCTGGCTATCATCCTTACCTTGCTAACTTTGGCTTGGCAAGAATTGCAAGTGAAAATGGTGATAACACCAATTCCAAGCCAGTTCAAAAACCCTATCTTGCTGGTTCTTATGGATACATGGCTCCTGAACATGCATCAATGCAACAAATAACTGAGAAGAGTGATGTGTACAGTTTTGGGGTGGTCCTACTTGAGGTCCTAACAGGAAGGCACCCATTAGACCCAACTCTGCCAGGGGGTGAACAATTGGTTCAGTGGGTTAAGAACCACTTAGCTAGCAAAGGAGACCCATCTGACATTCTTGACCCAAAGCTGAGAGGGAGGACTGACCCTACTATGCATGAAATGCTACAAACTCTAGCTGTGTCATTTCTATGTGTTAGAACACGAGCTGATGATCGTCCAACAATGAAGGACATTGTTGCAATGCTCAAGGAAATTCGACCTGTTGAGGCCTTAAGGACTGATTCTGATGTATTGAAGGGAGTTTTAACTGTGCATACTTCCTCACCACCTCCTAAGAATGTAGTTTCAAATGGATCTCCTAATTTTTCCTTTAATTTCTCAGACGACTCAATGTGTTGA 3339 0.4121 MIFSPSTIPKHITLSLLSTMSGSLMNLSLSPKIFSLTLLLLINSLFFSCCYSLNEQGQALLAWKNSLNSSSDALASWNSSNPSPCNWFGVHCNLQGEVVEINLKSVNLKGSLPSNFQPLRSLKILVLSSTNITGRIPKEIGDYQELISIDLSGNSLLGEIPEEICRLSKLQSLALQTNFLEGSIPFNIGNLSSLVNLTLYDNKLSGEIPKSIGSLSNLQVFRTGGNANLEGELPWDIGNCTNLVMLGLAETSISGTLPSSIGMLRRIQTIAIYTTLLSGSIPEEIGNCSELQNLYLYQNSISGSIPSQIGELNKLQSLLLWQNSIVGAIPEELGRCTELQVMDLSVNLLTGSIPKSFGQLSNLQGLQLSVNQLSGIIPHEISNCTSLTQLEFDNNAISGEIPHLIGNLRSLTLFYAWKNKLKGKIPDSLSECKDLQELDLSYNSLIGPIPKQLFGLRNLTNLLLLSNDLSGFIPPDIGNCTSLYRLRLNHNRLAGAIPSDISNLKNLNFLDLSSNHLVGETPATLSRCQELEFMDLHSNSLIGSVPDNLPKSLQLIDFSDNRLTGALNHSIGSLTELTKLYLGKNQLSGRIPAEILSCSKLQLLDLGSNSFSGEIPKELGQIASLEIFLNLSCNQFSGEIPPQFSSLSKLGVLDLSHNKLSGNLDALSDLQNLVSLNVSFNAFSGELPNTPFFRKLPLSDFTANDGLYIASGVVTPADRMGSEAHTRLTTKIIISILLCSSAVLVLLIIHVFVRAHIVNKVLMENNSWVMTLYHKFEFSIDDIVWNLTSANVIGTGSSGVVYKVTIPNGQTLAVKKMFSTAESGAFNSEIQTLGSIRHKNIIKLLGWGSNKNLKLLFYDYLPSGSLSSLIHGSGKGKAEWETRHDVILGVANALAYLHHDCVPSILHGDVKAMNVLLGPGYHPYLANFGLARIASENGDNTNSKPVQKPYLAGSYGYMAPEHASMQQITEKSDVYSFGVVLLEVLTGRHPLDPTLPGGEQLVQWVKNHLASKGDPSDILDPKLRGRTDPTMHEMLQTLAVSFLCVRTRADDRPTMKDIVAMLKEIRPVEALRTDSDVLKGVLTVHTSSPPPKNVVSNGSPNFSFNFSDDSMC 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3755g00026 1112 FunFam Putative LRR receptor-like serine/threonine-protein kinase 628 713 - -
Gabi3755g00026 1112 ProSiteProfiles Leucine-rich repeat profile. 649 671 IPR001611 GO:0005515
Gabi3755g00026 1112 Gene3D Phosphorylase Kinase; domain 1 754 860 - -
Gabi3755g00026 1112 FunFam Leucine-rich receptor-like protein kinase family protein 53 211 - -
Gabi3755g00026 1112 SMART LRR_typ_2 119 143 IPR003591 -
Gabi3755g00026 1112 SMART LRR_typ_2 647 670 IPR003591 -
Gabi3755g00026 1112 SMART LRR_typ_2 574 598 IPR003591 -
Gabi3755g00026 1112 SMART LRR_typ_2 312 336 IPR003591 -
Gabi3755g00026 1112 SMART LRR_typ_2 360 384 IPR003591 -
Gabi3755g00026 1112 SMART LRR_typ_2 504 527 IPR003591 -
Gabi3755g00026 1112 SMART LRR_typ_2 191 215 IPR003591 -
Gabi3755g00026 1112 SMART LRR_typ_2 456 480 IPR003591 -
Gabi3755g00026 1112 FunFam Putative LRR receptor-like serine/threonine-protein kinase 772 860 - -
Gabi3755g00026 1112 SMART LRR_sd22_2 574 589 - -
Gabi3755g00026 1112 SMART LRR_sd22_2 504 533 - -
Gabi3755g00026 1112 SMART LRR_sd22_2 288 314 - -
Gabi3755g00026 1112 SMART LRR_sd22_2 191 217 - -
Gabi3755g00026 1112 SMART LRR_sd22_2 432 458 - -
Gabi3755g00026 1112 SMART LRR_sd22_2 384 410 - -
Gabi3755g00026 1112 SMART LRR_sd22_2 647 666 - -
Gabi3755g00026 1112 FunFam Leucine-rich receptor-like protein kinase family protein 355 627 - -
Gabi3755g00026 1112 ProSitePatterns Serine/Threonine protein kinases active-site signature. 905 917 IPR008271 GO:0004672|GO:0006468
Gabi3755g00026 1112 SUPERFAMILY Protein kinase-like (PK-like) 777 1077 IPR011009 -
Gabi3755g00026 1112 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 212 303 - -
Gabi3755g00026 1112 Pfam Leucine rich repeat 482 541 IPR001611 GO:0005515
Gabi3755g00026 1112 Pfam Leucine rich repeat 338 397 IPR001611 GO:0005515
Gabi3755g00026 1112 Pfam Leucine rich repeat 629 682 IPR001611 GO:0005515
Gabi3755g00026 1112 Pfam Leucine rich repeat N-terminal domain 54 93 IPR013210 -
Gabi3755g00026 1112 SUPERFAMILY RNI-like 100 422 - -
Gabi3755g00026 1112 Pfam Protein kinase domain 790 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3755g00026 1112 SMART serkin_6 787 1062 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3755g00026 1112 Gene3D Ribonuclease Inhibitor 212 351 IPR032675 -
Gabi3755g00026 1112 ProSiteProfiles Protein kinase domain profile. 787 1065 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3755g00026 1112 Gene3D Ribonuclease Inhibitor 352 450 IPR032675 -
Gabi3755g00026 1112 Gene3D Ribonuclease Inhibitor 628 712 IPR032675 -
Gabi3755g00026 1112 Gene3D Ribonuclease Inhibitor 53 211 IPR032675 -
Gabi3755g00026 1112 Gene3D Transferase(Phosphotransferase) domain 1 861 1079 - -
Gabi3755g00026 1112 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 535 1063 - -
Gabi3755g00026 1112 SUPERFAMILY RNI-like 401 694 - -
Gabi3755g00026 1112 Gene3D Ribonuclease Inhibitor 550 627 IPR032675 -
Gabi3755g00026 1112 Gene3D Ribonuclease Inhibitor 451 549 IPR032675 -
Gabi3755g00026 1112 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 861 1079 - -
Gabi3755g00026 1112 ProSitePatterns Protein kinases ATP-binding region signature. 793 816 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3755g00026 Gabi-Chr3755 144768 148423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3755g00026 50 1111 Receptor kinase-like Gene Family AT5G56040 65.453 0.0 1381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi3755g00026 Pkinase 6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3755g00026 - - gmx:100775762 1732.23