Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3750g00072 ATGGCGGCAAACATGGGATGGGGTGTGAGTGTGATAGAATATGATGGATGGAGGAAGGGACCTTGGACTGCTGAGGAAGACAGATTGCTCATTGAGTATGTCAAGTTGCATGGTGAAGGTAGATGGAACTCCGTTGCTAGGCTTGCAGGACTGAAAAGAAATGGGAAGAGCTGTAGATTGAGATGGGTGAATTACCTGAGACCAGATCTCAAGAAGGGTCAGATAACACCACAGGAAGAAAGCATAATTCTAGAGCTGCATGCTATGTGGGGAAACAGGTGGTCAACAATAGCAAGAAGCTTGCCAGGAAGAACTGACAATGAGATAAAGAATTATTGGAGAACCCATTTCAAGAAAAAGACAAAAGGTCCATCTGTTGCTGCTGAAAAGGCTAAAAATCATCCCTTGAGGAGACAGCAATTTCAACTTCAACAACAGCAGTTGAGGCAGCAGCATAATGTTCAGCAGCAACAACAACAACAACTACAATTCAACTTGGAAATGAAAGGGGTCATAAACTTGCTTGAGGAAAATAACCATAGTGAGCCTTCTATATCTCTAGAGACCCAAGAAATGGTCAGCATGTATCCAAACACAACAGAACAGCAGGGTTACTTCTACTCTATGCTCAATGGCAATGTCTCTGTCCCAGAATCCTCAAACGAAGATTTTATGTGGGATGGGCTGTGGAACTTGGATGATATTCTTTGCAATTTCAGTGCAGCTACTGCTACAAGCAAAGCCACTCTTCACAATTTAGTTGCTCCCTTTTGTTAA 777 0.4286 MAANMGWGVSVIEYDGWRKGPWTAEEDRLLIEYVKLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESIILELHAMWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKTKGPSVAAEKAKNHPLRRQQFQLQQQQLRQQHNVQQQQQQQLQFNLEMKGVINLLEENNHSEPSISLETQEMVSMYPNTTEQQGYFYSMLNGNVSVPESSNEDFMWDGLWNLDDILCNFSAATATSKATLHNLVAPFC 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3750g00072 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 121 IPR017930 -
Gabi3750g00072 258 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 231 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gabi3750g00072 258 FunFam MYB-related transcription factor 76 120 - -
Gabi3750g00072 258 ProSiteProfiles Myb-like domain profile. 18 66 IPR001005 -
Gabi3750g00072 258 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Gabi3750g00072 258 Pfam Myb-like DNA-binding domain 72 116 IPR001005 -
Gabi3750g00072 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 70 IPR017930 -
Gabi3750g00072 258 CDD SANT 76 117 IPR001005 -
Gabi3750g00072 258 Gene3D - 19 71 - -
Gabi3750g00072 258 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Gabi3750g00072 258 Coils Coil 138 158 - -
Gabi3750g00072 258 CDD SANT 21 66 IPR001005 -
Gabi3750g00072 258 Gene3D - 76 120 - -
Gabi3750g00072 258 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Gabi3750g00072 258 SMART sant 18 68 IPR001005 -
Gabi3750g00072 258 SMART sant 71 119 IPR001005 -
Gabi3750g00072 258 FunFam Myb transcription factor 19 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3750g00072 Gabi-Chr3750 620186 621661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3750g00072 15 258 MYB Transcription Factor Family AT3G24310 58.015 1.44e-84 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3750g00072 Myb_DNA-binding 5.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3750g00072 K09422 - gmx:100782089 399.053