Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi3750g00063 | ATGGAGCAGGAAGAGCACGAAGTGTATGGTGCAGACATTCCCGATGAGGAGGACTTGGAGGATATGAAGAAGAGGTTGAAGGAGATCGAGGAAGAAGCTAGTGCCCTTCGCGAAATGCAGGCCAAGGTTGAAAAAGAGATGGGAGCTGTTCAAGATTCGTCTGGCTCTTCTGCATCTCAAGCTGAAAAAGAGGAAGTGGATGCTCGATCGATCTATGTTGGTAATGTTGACTATGCATGTACACCTGAAGAAGTCCAACAGCATTTTCAGTCATGTGGAACTGTGAACAGAGTGACAATATTGACAGACAAATTTGGTCAACCAAAAGGATTTGCTTATGTAGAGTTTGTTGAGGTTGATGCTGTTCCGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGTCGACAACTAAAGGTGTCTGCTAAACGTACAAATGTTCCTGGAATGAAACAGTATTATGGAAGACGACCAGTTGGTTTCAGATCTAGGAGGCCTTTCATGCCTTCTCCATTCTATCCACCATATGGTTATGGTAGGGTCCCGAGGTATAGAAGACCCACGCGATTCAGGCCATACTAG | 582 | 0.4467 | MEQEEHEVYGADIPDEEDLEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDSSGSSASQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVPNALLLNESELHGRQLKVSAKRTNVPGMKQYYGRRPVGFRSRRPFMPSPFYPPYGYGRVPRYRRPTRFRPY | 193 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi3750g00063 | 193 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 69 | 145 | IPR000504 | GO:0003723 | |
| Gabi3750g00063 | 193 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 71 | 139 | IPR000504 | GO:0003723 | |
| Gabi3750g00063 | 193 | Gene3D | - | 1 | 151 | IPR012677 | - | |
| Gabi3750g00063 | 193 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 5 | 168 | - | - | |
| Gabi3750g00063 | 193 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
| Gabi3750g00063 | 193 | MobiDBLite | consensus disorder prediction | 1 | 64 | - | - | |
| Gabi3750g00063 | 193 | MobiDBLite | consensus disorder prediction | 17 | 45 | - | - | |
| Gabi3750g00063 | 193 | SUPERFAMILY | RNA-binding domain, RBD | 60 | 169 | IPR035979 | GO:0003676 | |
| Gabi3750g00063 | 193 | Coils | Coil | 19 | 46 | - | - | |
| Gabi3750g00063 | 193 | SMART | rrm1_1 | 70 | 141 | IPR000504 | GO:0003723 | |
| Gabi3750g00063 | 193 | CDD | RRM_II_PABPs | 70 | 141 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi3750g00063 | Gabi-Chr3750 | 595522 | 599370 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi3750g00063 | 70 | 141 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 36.842 | 1.06e-09 | 55.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi3750g00063 | K14396 | - | gmx:100527545 | 315.079 |