Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3750g00061 ATGGAGCAGGAAGAGCACGAAGTGTATGGTGCAGACATTCCCGATGAGGAGGTTGAGATGGACGCAGATGCAGAACAACATGAAGAAGAAGATGAAGAACTTACCCCCAATCACCCAAACAAGGACTTGGAGGATATGAAGAAGAGGTTGAAGGAGATCGAGGAAGAAGCTAGTGCCCTTCGCGAAATGCAGGCCAAGGTTGAAAAAGAGATGGGAGCTGTTCAAGATTCGTCTGGCTCTTCTGCATCTCAAGCTGAAAAAGAGGAAGTGGATGCTCGATCGATCTATGTTGGTAATGTTGACTATGCATGTACACCTGAAGAAGTCCAACAGCATTTTCAGTCATGTGGAACTGTGAACAGAGTGACAATATTGACAGACAAATTTGGTCAACCAAAAGGATTTGCTTATGTAGAGTTTGTTGAGGTTGATGCTGTTCCGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGTCGACAACTAAAGGTGTCTGCTAAACGTACAAATGTTCCTGGAATGAAACAGTATTATGGAAGACGACCAGTTGGTTTCAGATCTAGGAGGCCTTTCATGCCTTCTCCATTCTATCCACCATATGGTTATGGTAGGGTCCCGAGGTATAGAAGACCCACGCGATTCAGGCCATACTAG 654 0.4465 MEQEEHEVYGADIPDEEVEMDADAEQHEEEDEELTPNHPNKDLEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDSSGSSASQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVPNALLLNESELHGRQLKVSAKRTNVPGMKQYYGRRPVGFRSRRPFMPSPFYPPYGYGRVPRYRRPTRFRPY 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3750g00061 217 CDD RRM_II_PABPs 94 165 - -
Gabi3750g00061 217 Gene3D - 12 175 IPR012677 -
Gabi3750g00061 217 Coils Coil 40 70 - -
Gabi3750g00061 217 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 17 192 - -
Gabi3750g00061 217 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 163 IPR000504 GO:0003723
Gabi3750g00061 217 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 169 IPR000504 GO:0003723
Gabi3750g00061 217 MobiDBLite consensus disorder prediction 31 69 - -
Gabi3750g00061 217 MobiDBLite consensus disorder prediction 1 30 - -
Gabi3750g00061 217 SMART rrm1_1 94 165 IPR000504 GO:0003723
Gabi3750g00061 217 MobiDBLite consensus disorder prediction 1 88 - -
Gabi3750g00061 217 SUPERFAMILY RNA-binding domain, RBD 84 193 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3750g00061 Gabi-Chr3750 595432 599370 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3750g00061 94 165 Eukaryotic Initiation Factors Gene Family AT2G36660 36.842 1.32e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3750g00061 K14396 - gmx:100527545 348.206