Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3750g00060 ATGGAGCAGGAAGAGCACGAAGTGTATGGTGCAGACATTCCCGATGAGGAGGTTGAGATGGACGCAGATGCAGAACAACATGAAGAAGAAGATGAAGAACTTACCCCCAATCACCCAAACAAGGACTTGGAGGATATGAAGAAGAGGTTGAAGGAGATCGAGGAAGAAGCTAGTGCCCTTCGCGAAATGCAGGCCAAGGTTGAAAAAGAGATGGGAGCTGTTCAAGAGGATTCGTCTGGCTCTTCTGCATCTCAAGCTGAAAAAGAGGAAGTGGATGCTCGATCGATCTATGTTGGTAATGTTGACTATGCATGTACACCTGAAGAAGTCCAACAGCATTTTCAGTCATGTGGAACTGTGAACAGAGTGACAATATTGACAGACAAATTTGGTCAACCAAAAGGATTTGCTTATGTAGAGTTTGTTGAGGTTGATGCTGTTCCGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGTCGACAACTAAAGGTGTCTGCTAAACGTACAAATGTTCCTGGAATGAAACAGTATTATGGAAGACGACCAGTTGGTTTCAGATCTAGGAGGCCTTTCATGCCTTCTCCATTCTATCCACCATATGGTTATGGTAGGGTCCCGAGGTATAGAAGACCCACGCGATTCAGGCCATACTAG 657 0.4475 MEQEEHEVYGADIPDEEVEMDADAEQHEEEDEELTPNHPNKDLEDMKKRLKEIEEEASALREMQAKVEKEMGAVQEDSSGSSASQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVPNALLLNESELHGRQLKVSAKRTNVPGMKQYYGRRPVGFRSRRPFMPSPFYPPYGYGRVPRYRRPTRFRPY 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3750g00060 218 Gene3D - 12 176 IPR012677 -
Gabi3750g00060 218 MobiDBLite consensus disorder prediction 1 90 - -
Gabi3750g00060 218 MobiDBLite consensus disorder prediction 31 73 - -
Gabi3750g00060 218 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 170 IPR000504 GO:0003723
Gabi3750g00060 218 Coils Coil 40 70 - -
Gabi3750g00060 218 CDD RRM_II_PABPs 95 166 - -
Gabi3750g00060 218 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 17 193 - -
Gabi3750g00060 218 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 164 IPR000504 GO:0003723
Gabi3750g00060 218 SMART rrm1_1 95 166 IPR000504 GO:0003723
Gabi3750g00060 218 MobiDBLite consensus disorder prediction 1 30 - -
Gabi3750g00060 218 SUPERFAMILY RNA-binding domain, RBD 85 194 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3750g00060 Gabi-Chr3750 595432 599370 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3750g00060 95 166 Eukaryotic Initiation Factors Gene Family AT2G36660 36.842 1.25e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3750g00060 K14396 - gmx:100527545 343.584