Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3750g00059 ATGGAGCAGGAAGAGCACGAAGTGTATGGTGCAGACATTCCCGATGAGGAGGTTGAGATGGACGCAGATGCAGAACAACATGAAGAAGAAGATGAAGAACTTACCCCCAATCACCCAAACAAGGTTAGGGACTTGGAGGATATGAAGAAGAGGTTGAAGGAGATCGAGGAAGAAGCTAGTGCCCTTCGCGAAATGCAGGCCAAGGTTGAAAAAGAGATGGGAGCTGTTCAAGATTCGTCTGGCTCTTCTGCATCTCAAGCTGAAAAAGAGGAAGTGGATGCTCGATCGATCTATGTTGGTAATGTTGACTATGCATGTACACCTGAAGAAGTCCAACAGCATTTTCAGTCATGTGGAACTGTGAACAGAGTGACAATATTGACAGACAAATTTGGTCAACCAAAAGGATTTGCTTATGTAGAGTTTGTTGAGGTTGATGCTGTTCCGAATGCTCTCCTGTTAAATGAATCAGAATTGCATGGTCGACAACTAAAGGTGTCTGCTAAACGTACAAATGTTCCTGGAATGAAACAGTATTATGGAAGACGACCAGTTGGTTTCAGATCTAGGAGGCCTTTCATGCCTTCTCCATTCTATCCACCATATGGTTATGGTAGGGTCCCGAGGTATAGAAGACCCACGCGATTCAGGCCATACTAG 660 0.447 MEQEEHEVYGADIPDEEVEMDADAEQHEEEDEELTPNHPNKVRDLEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDSSGSSASQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVPNALLLNESELHGRQLKVSAKRTNVPGMKQYYGRRPVGFRSRRPFMPSPFYPPYGYGRVPRYRRPTRFRPY 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3750g00059 219 CDD RRM_II_PABPs 96 167 - -
Gabi3750g00059 219 Gene3D - 12 177 IPR012677 -
Gabi3750g00059 219 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 165 IPR000504 GO:0003723
Gabi3750g00059 219 Coils Coil 38 72 - -
Gabi3750g00059 219 MobiDBLite consensus disorder prediction 1 49 - -
Gabi3750g00059 219 MobiDBLite consensus disorder prediction 62 90 - -
Gabi3750g00059 219 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 17 194 - -
Gabi3750g00059 219 SMART rrm1_1 96 167 IPR000504 GO:0003723
Gabi3750g00059 219 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 171 IPR000504 GO:0003723
Gabi3750g00059 219 MobiDBLite consensus disorder prediction 31 49 - -
Gabi3750g00059 219 MobiDBLite consensus disorder prediction 1 30 - -
Gabi3750g00059 219 SUPERFAMILY RNA-binding domain, RBD 86 195 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3750g00059 Gabi-Chr3750 595432 599370 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3750g00059 96 167 Eukaryotic Initiation Factors Gene Family AT2G36660 36.842 1.28e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3750g00059 K14396 - gmx:100527545 343.199