Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3750g00050 ATGGCGGATGCACCAACAAGCCCAGCTGGGGGGAGTCATGAGAGTGGTGGTGAACAGAGCCCGCGTGGTTCTTCATCTGGTGCAAGGGAACAGGACCGTTACCTGCCAATTGCAAATATAAGCCGTATCATGAAGAAAGCATTGCCAGCGAATGGGAAGATTGCGAAGGATGCCAAAGACACCATGCAGGAATGTGTTTCTGAATTCATCAGTTTTATTACCAGCGAGGCGAGTGAGAAATGCCAGAAAGAGAAGAGAAAGACCATTAATGGAGATGATTTGCTATGGGCGATGGCCACCTTAGGATTTGAGGACTACATAGAGCCGCTTAAGGTGTACCTAGCAAGGTACAGAGAGGGTGACACTAAAGGATCTGCTAGAAGTGGTGATGGATCTGCTAGACGAGATCAAGTAGGCCTTGCAAGTCAAAATGCTCAGCTTGTTCATCAGGGTTCGCTGAACTATATTAGTTCCCAGGTGCAGCCACAGCATCTGGTTTTGCCTTCAATGCAAAGCCATGAATAG 525 0.48 MADAPTSPAGGSHESGGEQSPRGSSSGAREQDRYLPIANISRIMKKALPANGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYREGDTKGSARSGDGSARRDQVGLASQNAQLVHQGSLNYISSQVQPQHLVLPSMQSHE 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3750g00050 174 SUPERFAMILY Histone-fold 31 130 IPR009072 GO:0046982
Gabi3750g00050 174 Gene3D Histone, subunit A 21 156 IPR009072 GO:0046982
Gabi3750g00050 174 FunFam Nuclear transcription factor Y subunit B-3 23 147 - -
Gabi3750g00050 174 MobiDBLite consensus disorder prediction 1 32 - -
Gabi3750g00050 174 MobiDBLite consensus disorder prediction 121 141 - -
Gabi3750g00050 174 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 34 98 IPR003958 -
Gabi3750g00050 174 PRINTS CCAAT-binding transcription factor subunit A signature 62 80 - -
Gabi3750g00050 174 PRINTS CCAAT-binding transcription factor subunit A signature 81 99 - -
Gabi3750g00050 174 PRINTS CCAAT-binding transcription factor subunit A signature 100 118 - -
Gabi3750g00050 174 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 142 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gabi3750g00050 174 ProSitePatterns NF-YB/HAP3 subunit signature. 65 81 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gabi3750g00050 174 MobiDBLite consensus disorder prediction 12 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3750g00050 Gabi-Chr3750 485228 490822 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3750g00050 7 168 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.619 4.14e-79 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gabi3750g00050 CBFD_NFYB_HMF 1.1e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3750g00050 K08065 - gmx:100779577 311.997