Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3750g00039 ATGAGTAATGAGGATCCCGGCATTTCAGGCAATAAATATACTGTTAGTGTTGGTTTAAGTGACCAAGTCCCGTATGATAATGATGCAGACAATATATGTGTACAGACGGGTGAAGAATTTTCTGCTGAGTTCTTACGCGATCGGGTTGCTTTAAGGAGATTTCCTATCATAGCCGATGCAGACCAGCGCCTGCCAAATAGATTGGATTTTAATACTAATTATAACTACCAGCTGGTTTATGAGGATCTAAAGCATGCTCTTGGGCTAAGGAGAATGGATTCTGATAGTAACTCGGATTCGTCAGAGATTGCTTTACCCAGGGGATACGTTGCTGAAGTTGACAACAGGGCTTATCCTAATAATTTGAGTAGATACCAGCTAGAACATGGCAGTAACAGACAAGTATCAGGTAATTTTTCTGAAGGAGTTTTTTGTGATCAAGTTACTTCAGGACCAAATGCTCCATCTATTTACACCATTGAGTCTCCTAGTTCTTGTCATCCTCATGGATCCATATTCTCAGAAGGTTCTCTCTATAAGAAGATAAAGTTTCTGTGTAGTTTTGGAGGTAGAATACTACCCAGGCCGAATGATGGGAAGCTCAGATATGTGGGTGGAGAAACGCGGATTATATCAATCAGGAAGAACATTACACTGGAGGAACTAATGAGGAAGACTTCTGCTATTTGCAATCAAACTCATATTATCAAATACCAGCTTCCTGGAGAGGATCTTGATGCTCTTATTTCTGTTTGTTCTGATGAGGATCTTCATCACATGATCGAGGAGTATGAAGAGCTTGAAAGAGCTGGAGGCTCTCAACGACTGAGGATTTTTCTCATACCTTCAAATGAGTCTGAGAGTCCAAGTTTCAATGAAGCAAGAGTCAATCAGCCTAGTGATGCTGATTATCATTATGTTGTTGCTGTTAATGGTATGCTGGATCCAAGTCCACGAAAGAATTCCGGTGGGCTGAGTTTGGCAAACCATACTGGCCAGTTTGGAAATACCTCTGATTACAACAGTCCACGTTTCCATAAGGATTCATCCACATCTGCATTGGCTTTAGAGGTGGCGGATTGCAGCCCTACTTCTGCAAATTTGGCAGGCATATTCTCCAAACCTGGTCCTCAATTTTTAACAGCACTGCAGGTAGCAGGCAAGTCATTTAATCAAATGCCTCCTTTATCTCCCATTTGTGTACAGCCTAAAGATCCTAAAAATTCTAATGTACAGCTATTTATGGATCAGCCATATAATGTTAATGAAAGTATTATTCCCTTTGTTATGGAAAAAGTTACACGTGACAACTCTTTGTACGTAGACAATAATACCGATTACGTTGATCCGATTGCATTCTATAACAATCTTGCTCAAGGGCCTCCATTTGTGAACTACCATCCTAGTAATCAATATCTGTTGGAGTCTGATCAGGCCAGGAAGCCTATTGATGATTTTCATTTTCACAGACAAAATAACAGCAAAGATTTTGACTCTTCTGCAATATGTAGTCAAACTGATATGATATTTGAGAAACCTTTAGTTACCAACGAAGGTTCATATCAGTTTAACAACATCGTCTCTCATCCTCATGATTCATTGAGTTTATTATCAACGTCCGGTGATAGAAAGGGATCTCAGTACAGAATATTGCATACACTTTCTGACTCGACACTTCAGGAGAATGACAAGAACTATAAAGTTCACTTGCAGTTTCCCCGTAGTGTAGAAAGAGACAAATTGCCATCACCCGAAACTTCATGTTCTTATGAAGAATTTTCAGTACAACCCGGAGAGATAATTGATGGGAAAGAACATGTGGCTAAGTATCAAAACTTCCCCACTTTTGGAATGACTGATAGTTGCAAGAGAGCACCAGGGATTGGTAAAGACAACTTGCAACGTGCAGAGAAAAGCAATGATTGGTTTGAAGAAAATGTTGGAGATATGTCACGAGGCAGTGCCATAGATTTAAAACATTCACAGTACATCAACTACCAAAATGTTGTTTGCTCATCTTCGCCAGATTTACATAGCACTGAATCACATGTATCTGCTGCACCATTTAACTCTTTAGAATCCACAAGGAACTCGAGGAAGCAACCACATGGTCTACCATTAGACACAACTGCTTCTGAGTTTTCCATTAGGAGCCAAAACTCATCAATGCATCACCAATATGCTATGCTTGAGACAAAAGACAATCAACCACTCCCCCCTGTCTCTTTTGAGTTGCAACCTATTGTGTCCCAAACTGACAAAGAGTCCATACCACCTATCTCTTATACAGACATGGGTTCTTCTTCCCTAAGAGAGGTTGTTATCTCTCATGAGGATCCTGCATACTACCTGCACCAAAAGGAAGAAAATGCATTCATTAACAGACAATCTTCTGGATACATCAATGAATTTTGCGCCAACGAGCCAGAATCAGTAGCTGTTGCCACGGGGCCAATTGATTATATTTCTTCAGGTATCCAGTCATGCTTACAAATTGTCTCAAATGTAGATGAAGAGGTTGAAGTTGAACCTACATCTCCTGAAAAGGAAGGGGTAGAGTGCGTTAATCCAGAATCTGAAAGTGAGCTTGCAAAAGCTGCTGGTGGAAACTTCAATAAGCCTATTGGCGATACAGCAACTGCTGAAACAGGGGCTGAAATTTATGGTTTACAGATTATTGAGAATGGTGATCTTGAAGAACTGCAGGAGCTTGGATCTGGAACCTATGGAACTGTTTATCATGGAAAGTGGAGGGGAACTGATGTTGCAATTAAGAGAATAAAAAGTAGTTGTTTCTCTGGTAGATTGTCAGAGCAAGAGCGGTTGGGTAAAGATTTTTGGAGAGAGGCACAGATTCTGTCAACTCTCCACCATCCAAATGTGGTGGCATTTTATGGGGTAGTTCCAGATGGCCCGGGTGGAACATTGGCAACAGTCACAGAATACATGGTGCATGGATCACTCAGGAATGTTCTCTTGAAAAAGGAGAGAGTGCTTGACCGTCGTAGAAGGCTCATAATTGCAATGGATGCAGCCTTTGGCATGGAATATTTGCATTTGAAAAATATTGTTCATTTTGATTTGAAGTGTGATAATTTACTTGTCAATCTGGGCGATCCTGAACGACCTGTTTGTAAGGTTGGAGATTTTGGCCTATCAAGAATTAAACGCAACACACTTGTTTCTGGTGGTGTTAGAGGAACCCTTCCATGGATGGCACCAGAATTACTGGATGGTAACAGTTGTAGGGTATCCGAGAAGGTTGATATTTTCTCATTTGGCATTACAATGTGGGAAATATTGACTGGGGAAGAACCATATGCTAACATGCACTGTGGTGCTATCATAGGAGGTATTGTCAGTAATACGCTCAGGCCCCCTATTCCAAAACGCTGTGATTCTGAGTGGAAAAAGTTGATGGAAGAGTGCTGGAGTCCTGATCCTTCAGCCAGGCCATGCTTCACTGAAGTTAAAAATAGACTTCGCAACATGTCAGCTGCACTGCAGAAAAAGAGACATATCAATCGATGA 3531 0.4092 MSNEDPGISGNKYTVSVGLSDQVPYDNDADNICVQTGEEFSAEFLRDRVALRRFPIIADADQRLPNRLDFNTNYNYQLVYEDLKHALGLRRMDSDSNSDSSEIALPRGYVAEVDNRAYPNNLSRYQLEHGSNRQVSGNFSEGVFCDQVTSGPNAPSIYTIESPSSCHPHGSIFSEGSLYKKIKFLCSFGGRILPRPNDGKLRYVGGETRIISIRKNITLEELMRKTSAICNQTHIIKYQLPGEDLDALISVCSDEDLHHMIEEYEELERAGGSQRLRIFLIPSNESESPSFNEARVNQPSDADYHYVVAVNGMLDPSPRKNSGGLSLANHTGQFGNTSDYNSPRFHKDSSTSALALEVADCSPTSANLAGIFSKPGPQFLTALQVAGKSFNQMPPLSPICVQPKDPKNSNVQLFMDQPYNVNESIIPFVMEKVTRDNSLYVDNNTDYVDPIAFYNNLAQGPPFVNYHPSNQYLLESDQARKPIDDFHFHRQNNSKDFDSSAICSQTDMIFEKPLVTNEGSYQFNNIVSHPHDSLSLLSTSGDRKGSQYRILHTLSDSTLQENDKNYKVHLQFPRSVERDKLPSPETSCSYEEFSVQPGEIIDGKEHVAKYQNFPTFGMTDSCKRAPGIGKDNLQRAEKSNDWFEENVGDMSRGSAIDLKHSQYINYQNVVCSSSPDLHSTESHVSAAPFNSLESTRNSRKQPHGLPLDTTASEFSIRSQNSSMHHQYAMLETKDNQPLPPVSFELQPIVSQTDKESIPPISYTDMGSSSLREVVISHEDPAYYLHQKEENAFINRQSSGYINEFCANEPESVAVATGPIDYISSGIQSCLQIVSNVDEEVEVEPTSPEKEGVECVNPESESELAKAAGGNFNKPIGDTATAETGAEIYGLQIIENGDLEELQELGSGTYGTVYHGKWRGTDVAIKRIKSSCFSGRLSEQERLGKDFWREAQILSTLHHPNVVAFYGVVPDGPGGTLATVTEYMVHGSLRNVLLKKERVLDRRRRLIIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLGDPERPVCKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDGNSCRVSEKVDIFSFGITMWEILTGEEPYANMHCGAIIGGIVSNTLRPPIPKRCDSEWKKLMEECWSPDPSARPCFTEVKNRLRNMSAALQKKRHINR 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3750g00039 1176 SMART PB1_new 196 283 IPR000270 GO:0005515
Gabi3750g00039 1176 Gene3D - 200 283 - -
Gabi3750g00039 1176 Pfam Protein tyrosine and serine/threonine kinase 900 1161 IPR001245 GO:0004672|GO:0006468
Gabi3750g00039 1176 ProSitePatterns Protein kinases ATP-binding region signature. 904 925 IPR017441 GO:0005524
Gabi3750g00039 1176 Pfam PB1 domain 197 281 IPR000270 GO:0005515
Gabi3750g00039 1176 PANTHER SERINE-THREONINE PROTEIN KINASE 226 1162 - -
Gabi3750g00039 1176 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 201 283 - -
Gabi3750g00039 1176 SUPERFAMILY CAD & PB1 domains 197 291 - -
Gabi3750g00039 1176 Gene3D Transferase(Phosphotransferase) domain 1 986 1176 - -
Gabi3750g00039 1176 CDD PB1_UP2 185 281 - -
Gabi3750g00039 1176 SUPERFAMILY Protein kinase-like (PK-like) 888 1161 IPR011009 -
Gabi3750g00039 1176 Gene3D Phosphorylase Kinase; domain 1 891 985 - -
Gabi3750g00039 1176 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 986 1176 - -
Gabi3750g00039 1176 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1023 1035 IPR008271 GO:0004672|GO:0006468
Gabi3750g00039 1176 PRINTS Tyrosine kinase catalytic domain signature 1088 1110 IPR001245 GO:0004672|GO:0006468
Gabi3750g00039 1176 PRINTS Tyrosine kinase catalytic domain signature 1132 1154 IPR001245 GO:0004672|GO:0006468
Gabi3750g00039 1176 PRINTS Tyrosine kinase catalytic domain signature 980 993 IPR001245 GO:0004672|GO:0006468
Gabi3750g00039 1176 PRINTS Tyrosine kinase catalytic domain signature 1017 1035 IPR001245 GO:0004672|GO:0006468
Gabi3750g00039 1176 SMART serkin_6 898 1167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3750g00039 1176 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 891 985 - -
Gabi3750g00039 1176 ProSiteProfiles Protein kinase domain profile. 898 1168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3750g00039 1176 CDD STKc_MAP3K-like 904 1161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3750g00039 Gabi-Chr3750 408832 415620 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3750g00039 17 322 MAP Kinase Kinase Kinase AT1G16270 40.635 5.21e-44 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Gabi3750g00039 PK_Tyr_Ser-Thr 2.7e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3750g00039 - - gmx:100810711 1783.46