Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3750g00024 ATGGAAATCTTCACCCAAAAGGAACTGCCAACTTGTTTGCAAGAAATGACAATGGCATCAAAGTTTTTGGATGATGCAATTATAAGAGGTTCTCACTCTCTCACTCCTTCTCATCATGTTCATGTATCGAGAAGTGGGGTAAACTCATCAATGGCATCAACTGAAAAGCTTCTTTTATTTTCAGATTCTACTTCAATGAAAGAAGAGGTACCTTTATCCACTTTGATTAGTCATATTCCTGCAAAGATCAATGGTCATGAAGACATCAAAAATGAGAAAGAGAAAAACCAATCCGTTTCTGGATTCAATTCTATCTGCACTCTTGGTGTCTCAGCCTCAGATATAAAACATGATTCTATTCCTCTAAATCTTTTGGAAACTCTCTCAGCATTACCTATAGCACAAGTTTCAGATGAGCCAGTGGCATCTTCAGCTTCTTCTTCTTCTTCTACACCAAAATTTCCAAACTTGTCTTTGTTTTTGCAGGAACCCACCATGCTGCACTCATCATCCTCACATATCAAAAGTGGTGAAGTCATGTCAGAAACTACAAATCCCACATATTCTTGGTCACAGTTTGGTCAAACCCAGCATCAATCAGGTAGTGATTCACACAAAATGAATAAGAATGTAACAAATCTTCAGTCCAAGTCTTTCAAAGACAATTGGTTGAGTACAACAAGGACTCAGCCTTTGAAGTATGCTTCAAGAGGTAAGTTGTTCAAAGGGGTGAGGCAGAGACATTGGGGGAAATGGGTTGCAGAGATTAGATTACCAAGAAATAGGACTAGGGTTTGGTTAGGGACTTTTAACACAGCTGAAGATGCTGCCATTGCATATGACACAGCAGCATACATATTAAGAGGAGAATATGCTCAGTTGAACTTTCCTGATCTAAAGCATGAAATTCAAGCCAATTCTTTGAATGGAACAACTGCTGCACTTCTTGAGGCCAAACTACAAGCAATTTCACAAGGTGTTTCTTCTCATAGGAAGCACACTGCTTCACCAGCAGGGTCAAACAATAAGCTCACTGAAGAGAATGACAAATTGAAAAGTAAAAATGGCAAGGATTCAACCATAAAGGAGTGGCAGTTTAATATAGAGAGCAAGGTTGGAGCTGAGACAACAGAGAGAAGCAAAAGTACTCATCATATGATATCAGATGTTGAAGCCGTTCAGTTAAGTAGAATGCCCTCCTTAGACATGGACATCATTTGGGATTCACTTTTAGTCTCTGATTCATGA 1248 0.3902 MEIFTQKELPTCLQEMTMASKFLDDAIIRGSHSLTPSHHVHVSRSGVNSSMASTEKLLLFSDSTSMKEEVPLSTLISHIPAKINGHEDIKNEKEKNQSVSGFNSICTLGVSASDIKHDSIPLNLLETLSALPIAQVSDEPVASSASSSSSTPKFPNLSLFLQEPTMLHSSSSHIKSGEVMSETTNPTYSWSQFGQTQHQSGSDSHKMNKNVTNLQSKSFKDNWLSTTRTQPLKYASRGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFNTAEDAAIAYDTAAYILRGEYAQLNFPDLKHEIQANSLNGTTAALLEAKLQAISQGVSSHRKHTASPAGSNNKLTEENDKLKSKNGKDSTIKEWQFNIESKVGAETTERSKSTHHMISDVEAVQLSRMPSLDMDIIWDSLLVSDS 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3750g00024 415 Gene3D AP2/ERF domain 240 298 IPR036955 GO:0003700|GO:0006355
Gabi3750g00024 415 SUPERFAMILY DNA-binding domain 240 298 IPR016177 GO:0003677
Gabi3750g00024 415 PRINTS Ethylene responsive element binding protein signature 263 279 IPR001471 GO:0003700|GO:0006355
Gabi3750g00024 415 PRINTS Ethylene responsive element binding protein signature 241 252 IPR001471 GO:0003700|GO:0006355
Gabi3750g00024 415 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 96 410 - -
Gabi3750g00024 415 CDD AP2 239 299 IPR001471 GO:0003700|GO:0006355
Gabi3750g00024 415 SMART rav1_2 240 303 IPR001471 GO:0003700|GO:0006355
Gabi3750g00024 415 MobiDBLite consensus disorder prediction 327 344 - -
Gabi3750g00024 415 Pfam AP2 domain 241 289 IPR001471 GO:0003700|GO:0006355
Gabi3750g00024 415 FunFam Ethylene-responsive transcription factor 2 239 298 - -
Gabi3750g00024 415 ProSiteProfiles AP2/ERF domain profile. 240 297 IPR001471 GO:0003700|GO:0006355
Gabi3750g00024 415 MobiDBLite consensus disorder prediction 327 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3750g00024 Gabi-Chr3750 262678 263925 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3750g00024 119 410 AP2-EREBP Transcription Factor Family AT4G13620 43.667 5.36e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi3750g00024 AP2 8.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3750g00024 - - gmx:100820013 555.444