LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3750g00013	ATGACAACATCAGAAGAAATTTCAACTTTGAAACTGTTGAGCCAACATCTCTTGGGGGATATCTCAGACTCATTCCTCTCCAATCTCATTCCTGTAAAACTCGAAGACCCATCATCAGAATTTGATTTGGATTCAAGTTTATCAGAACAAAGCATATTCTGCACTTTTCTTGAATGCTTTGATATTGAAGCAGATACAGAAAAAGTTGTTGACCTCACTTCTCACGAGGTCCAAAACTCCATAGCAGAGGAAACCACAGAGAAGTCCAATTCTGCCGAACCAATGATGTCAGGGAAAAAGGAACCAACATGCTACGAGGGAAGGCGTTACAGAGGAGTGAGGAGAAGACCATGGGGCAAGTTTGCTGCAGAGATCCGTGACCCCACAAGGAAAGGGACAAGGGTGTGGCTTGGTACATTTGACACTGAGATTGATGCTGCCAAGGCTTATGATTGTGCTGCCTTCAGAATGAGGGGTCACAAAGCCATATTGAATTTCCCTCTGGAGGCTGGAGTGTCTAATCCAAAGCCCAACAATTGTGGCAGGAAAAGGAGAAGAGAGCATATACAAGAAGCTTGTACAAGTTCAAGTTATGTTGTGTCCTGA	606	0.4373	MTTSEEISTLKLLSQHLLGDISDSFLSNLIPVKLEDPSSEFDLDSSLSEQSIFCTFLECFDIEADTEKVVDLTSHEVQNSIAEETTEKSNSAEPMMSGKKEPTCYEGRRYRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFDTEIDAAKAYDCAAFRMRGHKAILNFPLEAGVSNPKPNNCGRKRRREHIQEACTSSSYVVS	201

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3750g00013	201	SMART	rav1_2	109	173	IPR001471	GO:0003700\|GO:0006355
	Gabi3750g00013	201	Pfam	AP2 domain	109	160	IPR001471	GO:0003700\|GO:0006355
	Gabi3750g00013	201	CDD	AP2	117	167	IPR001471	GO:0003700\|GO:0006355
	Gabi3750g00013	201	FunFam	Ethylene-responsive transcription factor 2	108	169	-	-
	Gabi3750g00013	201	PRINTS	Ethylene responsive element binding protein signature	110	121	IPR001471	GO:0003700\|GO:0006355
	Gabi3750g00013	201	PRINTS	Ethylene responsive element binding protein signature	149	169	IPR001471	GO:0003700\|GO:0006355
	Gabi3750g00013	201	SUPERFAMILY	DNA-binding domain	109	169	IPR016177	GO:0003677
	Gabi3750g00013	201	ProSiteProfiles	AP2/ERF domain profile.	109	167	IPR001471	GO:0003700\|GO:0006355
	Gabi3750g00013	201	PANTHER	DNA-BINDING DOMAIN	86	180	IPR044808	GO:0003700\|GO:0009873
	Gabi3750g00013	201	Gene3D	AP2/ERF domain	108	169	IPR036955	GO:0003700\|GO:0006355
	Gabi3750g00013	201	MobiDBLite	consensus disorder prediction	81	103	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3750g00013	Gabi-Chr3750	130354	130976	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3750g00013	1	191	AP2-EREBP Transcription Factor Family	AT5G07580	40.887	5.41e-41	136

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Gabi3750g00013		AP2	4.4e-15	CL0081