Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3750g00001 ATGGCAGGAAACTTCAGATTCACAATGGACCAGAAGGATATTGTTAGATTCTTGACTACAACTGTTGATAGTTTCATTCAGGATCGGTTAATCAACAAAGAACAAAGAACCCAACACAAAGAACAGTGTGCAGAGAGGTTAGCAGCTGAAGATGGAAGTTGTGACAAAGACACTGAGGTGGAGTACTCTGATCAAGCAGTATTAGCAAATCTGGATTGGGGTATTGAAGCCCTTGAAGAAGCTATCAATACATATAATATGGAAACCAAGCTTGCAAGACTAGATTATGCTGAGAAGATGTTGCAAGTTTGTGCAATGTTGAATCCTAAACAAAAAACTGCTGGAGTTCCAAACTTCTACCTCTCAGCTTGGGCACACTTAAATCTATCCTTCCTATGGAAGTTGAGGAACAATATTAAGAATTGTATTTTTCATGTTCTTGAGATGTTTATTGTTGATCCTTTTTTCTCTCGGATTGACTTTGCTCCTGAACTATGGAAAAACCTGTTTCTTCCACACATGAGCTCAATTGTGGGGTGGTATTCAGAGGAGAGGCACAAGCTTATGATGGAAGTGATACCTGACTCTTCTGATTTGTCCTTTACAGCTGATTTTGATCAATTTTTCAATGAGTCTTTTGTATTTTCTATGAGGCCACATCAATTAGATAAATTGCAAAAGCTGGAACAGCTTTATGGAGAGTCATTGGATGAAAACACAAGGCTATATGCAAAATATTATAACGATTGCATGAACTCTGATTCCAATTCAAGCAAGAAGGTGGTTCCTATGTTTCCAATTGTTGAGCCCCCAATGACTCCTTTGCATGAGTTGAGCATGTCTATTCCTGATTATGTAAAATTTGGTCCTATTTTGCCCAAGAGTGCAGGGTTTTCCTTGACATCAAGAGCTAAAGATGGTGTAAATGAAACAATTAGAGAGAATTTAACTTCCAGCCATTCAAAGGTGGAGAAATCATCCATATGGGGTGCTAAGGAGAGCATCATTGAAGAGAATGAAGATGATTCAGATTCTGAGCTTGATGATGCATCTGTGGATTCTGATAACAAAAACAATGTTTTCTCACCTGGAAAGGAGATGATCAAGGATGAGGATACTGTGCCAAAAGTGCATCTATCAAACAATAAGAATCAAATACATTCTCCTAATATTTCTCCCTTAGATTCCCCAAGAACTGCTCCAAATAACTCATCCACAAATCCTGATATTCGAAGTAAAAGAGAAACCAAGTCTTTGCGCTTACTGTCTAGTCGTTTCAGGGACTCGACTATTTCTGACTCTCTATCATTATCTCCAGACATGAGCACTGATCACAATTTCAACTCTGATAACGAAGTGATGGTTTTGAAGAATAATCAGAGGAAAAACTATAACCAAACACCAAGTATGAATCATGACAATGAGAATAACCCGGTACTTAATGACAGTTCCCTTTGTGAAAGTGATGATGGATATCAAAGCAGCATTTCATTATCAAAATTAGAGAAGCTAACTATTGGATCAAAACCACCCAAAGATTTTGTTTGCCCAATCACAGGTCAGATATTTTGTGATCCTGTCACCCTTGAAACAGGCCAGACCTTTGAAAGAAAAGCAATTCTAGAGTGGCTCAAAACAGGAAACACAACATGTCCCATCACACGACAGCTTCTATCTGCAAGCACATTACCCAAAACAAACTATGTTTTGAAGAGATTAATAACATCTTGGAAAGAACAGCATCCTGAACTAACTCAAGAATTCTCCAATTCTAACACACCAAGGGCTTCTTCCTGTTCTCCAGCTGCAAAAGACATCCCAATGCTCTCCCTTACACAAAGAACAACTGATTCACCAAGTCACAAGAACAAAGGAGATTATATTAAACAAAGGAGCAAAAGATTTATGCGGGTTGCTGTGGCAACATCTCCAACTAGTGTGCTATCTCAAGCTGCAGTAGAAACAATTATGAATTCCTTGAAACCTTACATTTCAAGTCTTTGTACATCAGAAAACCTGCAAGAATGTGAAGAAGCTGTATTGGAAATAGCAAGATTATGGAAAGATTCACAGACTGATCCTCAGATTCATTCTTATTTATCAAAGCCAACTATCATAAGTGGTTTAGTGGAAATACTTTCAGCTTCTGTGAATAGAGAAGTTCTGAGAACATCAATTTATATTCTTTCCGAGCTAATTTTCGCAGATGAAAGTGTTGGAGAAACACTTAACAGTGTAGATTCTGATTTTGATTGCTTGGCTACTCTACTCAAGAATGGTTTGGCTGAGGCTGCTCTTCTTATTTATCAAATAAGGCCAGTTTTTGCTCAGCTTTCAGCACATGAACTTATACCCTCTCTTGTCCAGGTGATCCAGAACAAAAGTGAAGAGTTAGATGATTTTCAGTTAGTTATAGACCCAAAAGATGCTTCCTTAGCAATTCTTGAGCAAATTTTAATTGGAGGGGATGAATATAGCAGGTCCCTTAATGCTTTGAGTGTTATTTCAGCAAATGGAATTCCAGCCTTAGCAAAGTATTTGGAGAGGATGGAAGGAAGGAGGTCTGTTGTTTCCATACTTTTGTGTTGTATGCAAGTTGAAAAAGGTTGCAAGAGCTTAATAGCAAGCAGAATAGAATTATCTCCTGTTCTTGAATTATTTCATGCTGGAAATGATAGTGTGAGAGGCATCTGTGTGGAGTTTCTCTCAGAACTGGTTCAGTTGAATAGAAGGACGTTCTGCAACCAGATATTGCAGATAATCAAGGATGAAGGAGCATTCAGTACAATGCATACATTTCTTGTATATCTTCAGATGGCTCCAATGGAGCATCAACTTGCTGTTGCCAGTCTTCTTCTTCAGCTTGATCTTCTGGTTGAGCCACGAAAGATGAGCATTTACAGGGAAGAAGCTATAGAGACACTCATAGAAGCACTTTGGCAAAAGGACTTCTCAAATACTCAAATGAAGGCTTTAGATGCTTTGCTATTTCTTATAGGACATGTCACTTCCTCAGGAAAGTCATATACTGAAGCTTGGTTGCTCAAGACTGCAGGATTTGATCAACCTTACAATGCTTTAATGAAGGCCGAGCAGTCGGGACAGTATGACAATGATTTGATGGAAACAATGGAGGATGAGAAAAATGCTATGAACTCTTGGCAGAAAAGGGTAGCTTTTGTACTTTGCAACCATGAAAATGGTTCAATATTTCAAGCTTTGGAAGAATGTCTAAGAAGTAACTCCTTAAAGATGGCAAAATCTAGCCTTGTTCTTGTTACATGGCTTACACAGATGCTCCCTACTCTTCCTGATACTGGTGTAAGGGAAGTTGCTCGCAAGTCCTTGCTTGAAGAACTTATAAATGTCCTCCAGTCATCCAAGAACCTGGAGGAAAAGATCCTTGCTGCCCTAGCTTTAAAGACTTTCATTAGTGATCCAATTGCTCAAGAAGCACTTGGAGTTTATGCTAAAAGCATCTATAGAACTTTGAGGAAGCTGAGGAAATATTCAGTGGTGGCAGTTGATATTATGAAAGCCTTACTAAACTTGAAATCTGTTGATGTGACAGAGTTGTGGAGTTGTAAAGAAGTTGTTGAGTTAGATTTGAGCTCAAATGGTGAGGTGCTTTCTTTGCTTTACCTGAACGGTCAGGTCTTGAGTGGACACTCAGATGGAACTATCAAGGTATGGGATACAAGGAAGAGAATACCAAGAGTGATTCAAGAAACTCATGAGCACACAAAAGCAGTAACATCTCTCTGTTCTTCAGTTGATAGACTTTACAGTGGCTCCTTAGACAAAACCATCAGGATTTGGACGATTAAACCAGATGAGATTAAATGTATAGATGTTCATGATGTTAAGGAGCCAGTGTATGAGCTGACAGCCAATGCTAAATTGGCATGCTATGTATCTCAAGGAACTGGAGTTAAGGTTTTCAATTGGTCTGAGGCTCCAAAGCTCATCAATTTCAACAAATATGTGAAATGCCTTGCTGTTGCTGGGGACAAACTGTATTGTGGTTGCTCTGGTTACAGCATTCAGGAGGTTGACTTGTCCAAATATACATCAAATTCATTCTGCTCTGGTACAAGAAAATTGTTGGGAAAACAAACCATACACTCCCTTCAAATTCATGATGGTTTCCTCTTTGCTTGTGGTTCTTCTGTTGATGCAACTGCAGGAAAGGTATTTTCACTTTCCACCAAAATGGTAGTGGGATCACTCTCAACTGGACTTGATATCCATCGCATAGCCATCAACAGCGACTTCATATTTGCTGGTACAAAATTTGGCACCATTGAGGTTTGGCTAAAAGATAAGTTCACCCGGGTTGCTTCCATCAAAATGGCTGGTGGTCACACAAAAATCACATCATTAATATCAGATACAGATGGTATGATGCTTTTTGTTGGTTCCTCTGATGGCAAGATTCAGGTTTGGGCTTTGGATTAA 4458 0.3892 MAGNFRFTMDQKDIVRFLTTTVDSFIQDRLINKEQRTQHKEQCAERLAAEDGSCDKDTEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNFYLSAWAHLNLSFLWKLRNNIKNCIFHVLEMFIVDPFFSRIDFAPELWKNLFLPHMSSIVGWYSEERHKLMMEVIPDSSDLSFTADFDQFFNESFVFSMRPHQLDKLQKLEQLYGESLDENTRLYAKYYNDCMNSDSNSSKKVVPMFPIVEPPMTPLHELSMSIPDYVKFGPILPKSAGFSLTSRAKDGVNETIRENLTSSHSKVEKSSIWGAKESIIEENEDDSDSELDDASVDSDNKNNVFSPGKEMIKDEDTVPKVHLSNNKNQIHSPNISPLDSPRTAPNNSSTNPDIRSKRETKSLRLLSSRFRDSTISDSLSLSPDMSTDHNFNSDNEVMVLKNNQRKNYNQTPSMNHDNENNPVLNDSSLCESDDGYQSSISLSKLEKLTIGSKPPKDFVCPITGQIFCDPVTLETGQTFERKAILEWLKTGNTTCPITRQLLSASTLPKTNYVLKRLITSWKEQHPELTQEFSNSNTPRASSCSPAAKDIPMLSLTQRTTDSPSHKNKGDYIKQRSKRFMRVAVATSPTSVLSQAAVETIMNSLKPYISSLCTSENLQECEEAVLEIARLWKDSQTDPQIHSYLSKPTIISGLVEILSASVNREVLRTSIYILSELIFADESVGETLNSVDSDFDCLATLLKNGLAEAALLIYQIRPVFAQLSAHELIPSLVQVIQNKSEELDDFQLVIDPKDASLAILEQILIGGDEYSRSLNALSVISANGIPALAKYLERMEGRRSVVSILLCCMQVEKGCKSLIASRIELSPVLELFHAGNDSVRGICVEFLSELVQLNRRTFCNQILQIIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQLDLLVEPRKMSIYREEAIETLIEALWQKDFSNTQMKALDALLFLIGHVTSSGKSYTEAWLLKTAGFDQPYNALMKAEQSGQYDNDLMETMEDEKNAMNSWQKRVAFVLCNHENGSIFQALEECLRSNSLKMAKSSLVLVTWLTQMLPTLPDTGVREVARKSLLEELINVLQSSKNLEEKILAALALKTFISDPIAQEALGVYAKSIYRTLRKLRKYSVVAVDIMKALLNLKSVDVTELWSCKEVVELDLSSNGEVLSLLYLNGQVLSGHSDGTIKVWDTRKRIPRVIQETHEHTKAVTSLCSSVDRLYSGSLDKTIRIWTIKPDEIKCIDVHDVKEPVYELTANAKLACYVSQGTGVKVFNWSEAPKLINFNKYVKCLAVAGDKLYCGCSGYSIQEVDLSKYTSNSFCSGTRKLLGKQTIHSLQIHDGFLFACGSSVDATAGKVFSLSTKMVVGSLSTGLDIHRIAINSDFIFAGTKFGTIEVWLKDKFTRVASIKMAGGHTKITSLISDTDGMMLFVGSSDGKIQVWALD 1485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3750g00001 1485 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1451 1485 - -
Gabi3750g00001 1485 Gene3D - 650 1189 IPR011989 -
Gabi3750g00001 1485 ProSiteProfiles U-box domain profile. 509 584 IPR003613 GO:0004842|GO:0016567
Gabi3750g00001 1485 MobiDBLite consensus disorder prediction 334 418 - -
Gabi3750g00001 1485 SMART WD40_4 1442 1483 IPR001680 GO:0005515
Gabi3750g00001 1485 SMART WD40_4 1194 1232 IPR001680 GO:0005515
Gabi3750g00001 1485 SMART WD40_4 1237 1274 IPR001680 GO:0005515
Gabi3750g00001 1485 SUPERFAMILY ARM repeat 656 1011 IPR016024 -
Gabi3750g00001 1485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 498 593 IPR013083 -
Gabi3750g00001 1485 ProSiteProfiles Trp-Asp (WD) repeats profile. 1451 1485 IPR001680 GO:0005515
Gabi3750g00001 1485 Pfam WD domain, G-beta repeat 1453 1482 IPR001680 GO:0005515
Gabi3750g00001 1485 Pfam WD domain, G-beta repeat 1216 1232 IPR001680 GO:0005515
Gabi3750g00001 1485 Pfam WD domain, G-beta repeat 1245 1273 IPR001680 GO:0005515
Gabi3750g00001 1485 ProSitePatterns Trp-Asp (WD) repeats signature. 1219 1233 IPR019775 -
Gabi3750g00001 1485 SUPERFAMILY WD40 repeat-like 1217 1484 IPR036322 GO:0005515
Gabi3750g00001 1485 Coils Coil 1113 1133 - -
Gabi3750g00001 1485 CDD RING-Ubox_PUB 511 563 IPR045210 -
Gabi3750g00001 1485 SUPERFAMILY RING/U-box 509 582 - -
Gabi3750g00001 1485 ProSiteProfiles Trp-Asp (WD) repeats profile. 1219 1234 IPR001680 GO:0005515
Gabi3750g00001 1485 Gene3D - 1280 1485 IPR015943 GO:0005515
Gabi3750g00001 1485 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1484 - -
Gabi3750g00001 1485 PRINTS G protein beta WD-40 repeat signature 1219 1233 IPR020472 -
Gabi3750g00001 1485 PRINTS G protein beta WD-40 repeat signature 1470 1484 IPR020472 -
Gabi3750g00001 1485 PRINTS G protein beta WD-40 repeat signature 1261 1275 IPR020472 -
Gabi3750g00001 1485 Gene3D - 1190 1279 IPR015943 GO:0005515
Gabi3750g00001 1485 Pfam U-box domain 511 581 IPR003613 GO:0004842|GO:0016567
Gabi3750g00001 1485 ProSiteProfiles Trp-Asp (WD) repeats profile. 1244 1276 IPR001680 GO:0005515
Gabi3750g00001 1485 SMART Ubox_2 513 577 IPR003613 GO:0004842|GO:0016567
Gabi3750g00001 1485 MobiDBLite consensus disorder prediction 378 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3750g00001 Gabi-Chr3750 23813 30530 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3750g00001 500 868 U-box Gene Family AT1G23030 26.494 7.76e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3750g00001 - - gmx:100776142 2563.1