Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi374g00024 ATGATAACGGTAGCTCCTTCAGTTGACACCAAAGAAGTGTCTTCCCCTAAAAATGCTACTTCTACAGACCAAAACCAGAACCAAAACCAAAACCAAAACCAACCTTGTTGTTCTCCCCAAACTACCCACGTCTTCAAATCAAAATTACCAGACATACCCATCTCCAACCACCTTCCCCTCCACACATACTGCTTCGAGAAACTATCCGAATTCGCCGACCGTCCATGTCTCATCGTCGGCTCCGCCGCCAAAACATACACCTACGCCGAGACCCACCTCTTTTCCCGAAAGATCGCCGCCGGCCTGTCCAACCTCGGCATCCACAAAGGCGACGTCATCATGATTCTCCTCCAAAACTGCGCCGAGTTTGTCTTCTCCTTCATAGCAGCCTCCATGATCGGCGCCGTCGCAACCACCGCCAACCCATTCTACACCTCCGCCGAGATCTTCAAGCAATTCACCGCTTCCAAATCGAAGCTAATCATCACTCAGGCAATGTACGTGGACAAGCTCCGCCAGCACGAGGACATGAAACTCGGGGAAGACTTCAAGGTGATCACCGTCGACGACCCGCCGGAGAATTGCCTACATTTCTCGGTGATCTCGGAGGGGAACGAGAACGAAGTGCCGGAGGTGGAGATCAACCCTGATGACGCGGTGGCGCTTCCGTTTTCCTCCGGCACGACGGGGTTACCGAAGGGAGTGATTCTGACACACAAGAGCTTAACAACGAGCGTAGCTCAACAAGTGGATGGAGAGAACCCGAACCTGTATCTGAATACCGAAGACGTTCTGTTATGTGTGCTTCCGTTGTTTCACATATTCTCGCTGAACAGTGTGCTGTTATGCGCGCTGAGAGCGGGGAGTGCGGTTCTTCTTATGCACAAGTTTGAGATAGGGACGTTGCTGGATCTGATACAGCGGTATCGGGTGACGGTGGCGATGGTGGTGCCGCCGCTGGTGCTGGCTCTTGCGAAGAATCAGATGGTGGCGGAGTTTGATCTGAGCTCTATCCGGTTGGTGCTGTCAGGGGCTGCGCCGCTGGGAAAGGAGTTGGAAGAGGCTCTCCGGAACAGAGTGCCTCAGGCTGTTTTGGGACAGGGTTACGGCATGACAGAGGCAGGTCCGGTGCTATCCATGTGCTTGGGATTTGCAAAGCAATCGATCCCAACAAAATCAGGGTCATGTGGCACTGTTGTAAGAAATGCAGAGCTCAAAGTTGTTGACCCTGAAACTGGTTCTTCTCTTGGCTATAATCAACCCGGTGAAATTTGCATTCGAGGCCAACAAATCATGAAAGGATATCTGAACGATGAGAAGGCTACAGCAACGACTATCGATGCAGAGGGTTGGCTTCATACCGGTGATGTTGGCTATATAGATGATGATGATGAAATTTTCATCGTTGACAGGGTGAAGGAACTCATCAAATTTAAAGGCTTCCAGGTGCCTCCAGCAGAACTTGAAGGGCTTCTTGTAAGCCACCCCTCCATTGCAGACGCAGCTGTTGTCCCACAAAAGGATGTTGCTGCTGGTGAAGTTCCTGTTGCTTTCGTGGTGAGGTCAAATGGCTTTGATCTAACTGAAGAGACCGTAAAGGAGTTTATAGCTAAACAGGTTGTGTTTTATAAAAGACTGCACAAAGTTTACTTTGTTCATGCAATTCCGAAGTCTCCAGCAGGGAAGATATTAAGGAAAGACCTCAGAGCAAAGCTAGAAACGGCAACCCAGACGCCCTAG 1740 0.5052 MITVAPSVDTKEVSSPKNATSTDQNQNQNQNQNQPCCSPQTTHVFKSKLPDIPISNHLPLHTYCFEKLSEFADRPCLIVGSAAKTYTYAETHLFSRKIAAGLSNLGIHKGDVIMILLQNCAEFVFSFIAASMIGAVATTANPFYTSAEIFKQFTASKSKLIITQAMYVDKLRQHEDMKLGEDFKVITVDDPPENCLHFSVISEGNENEVPEVEINPDDAVALPFSSGTTGLPKGVILTHKSLTTSVAQQVDGENPNLYLNTEDVLLCVLPLFHIFSLNSVLLCALRAGSAVLLMHKFEIGTLLDLIQRYRVTVAMVVPPLVLALAKNQMVAEFDLSSIRLVLSGAAPLGKELEEALRNRVPQAVLGQGYGMTEAGPVLSMCLGFAKQSIPTKSGSCGTVVRNAELKVVDPETGSSLGYNQPGEICIRGQQIMKGYLNDEKATATTIDAEGWLHTGDVGYIDDDDEIFIVDRVKELIKFKGFQVPPAELEGLLVSHPSIADAAVVPQKDVAAGEVPVAFVVRSNGFDLTEETVKEFIAKQVVFYKRLHKVYFVHAIPKSPAGKILRKDLRAKLETATQTP 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi374g00024 579 ProSitePatterns Putative AMP-binding domain signature. 222 233 IPR020845 -
Gabi374g00024 579 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 40 570 - -
Gabi374g00024 579 MobiDBLite consensus disorder prediction 1 38 - -
Gabi374g00024 579 Gene3D - 473 576 IPR045851 -
Gabi374g00024 579 FunFam Long-chain-fatty-acid--CoA ligase FadD 46 473 - -
Gabi374g00024 579 CDD 4CL 54 568 - -
Gabi374g00024 579 MobiDBLite consensus disorder prediction 8 38 - -
Gabi374g00024 579 Pfam AMP-binding enzyme 68 478 IPR000873 -
Gabi374g00024 579 FunFam 4-coumarate--CoA ligase 2 474 575 - -
Gabi374g00024 579 Gene3D - 37 472 IPR042099 -
Gabi374g00024 579 SUPERFAMILY Acetyl-CoA synthetase-like 42 574 - -
Gabi374g00024 579 Pfam AMP-binding enzyme C-terminal domain 487 562 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi374g00024 Gabi-Chr374 118028 123274 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi374g00024 38 485 Monolignol Biosynthesis Gene Families AT1G65060 73.392 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi374g00024 K01904 - gmx:547492 984.556