Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi374g00023 ATGCTCCATTCGACCATTCCCCAACTTCACATGGCATCTCTGCTAGAAATTTTCCGTCGCTCAAAATCCCATGCTTCTCTTTCTCAACTCCTCTTCCTTCGAAGAATGACTTGCAAGGTTTTTGTTAAAGGTTTAGCATTTTCTACTACAGAAGACAAATTAGCCGAAGCTTTTTCTCAATACGGCAGGGTCCTGAAAGCTGATATAATACTGAATAAAGCCAAGAATAGACCCAAAGGTTTTGGATATGTGACTTTTTCTAAGGAGGAAGAAGCCCGTAAGGCACAGATGAGCATGAATAGAAAGATATTACATGGGCGTGTGTTGTATGTTGACATGCAACCACCTAACAAGCAATTTTTTGAGTAG 369 0.4038 MLHSTIPQLHMASLLEIFRRSKSHASLSQLLFLRRMTCKVFVKGLAFSTTEDKLAEAFSQYGRVLKADIILNKAKNRPKGFGYVTFSKEEEARKAQMSMNRKILHGRVLYVDMQPPNKQFFE 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi374g00023 122 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Gabi374g00023 122 SMART rrm1_1 39 112 IPR000504 GO:0003723
Gabi374g00023 122 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 38 113 - -
Gabi374g00023 122 Gene3D - 19 120 IPR012677 -
Gabi374g00023 122 SUPERFAMILY RNA-binding domain, RBD 37 118 IPR035979 GO:0003676
Gabi374g00023 122 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi374g00023 Gabi-Chr374 109546 112573 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi374g00023 37 115 Eukaryotic Initiation Factors Gene Family AT4G34110 30.488 2.38e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi374g00023 - K13195 gmx:100527061 153.68