Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi374g00016 ATGGACCGGAACGGTTCATCCATTTCCGGTCCGGTTTTTCAAGCATGTCAAAACCTAGGCGTGGCGTGCTCGTATCGCAGTTACTCTTGGTCACGGTCACTTGGTCCGGTGGTCCCCCTTCATCTTCAACCTCAGGTGTTCTCTGCCTCTGAGGTCAACACTGCACAACGCTTTAGCGGTTATGGCTTCTTAAATTTCTCAGGTAAGCAACTTACTAAGATGGGAACACAGCCCCAGCAAAGATGTCGGGAGGAAGAGGAGGAGGAGATGCCAGGTCGTGGAACTACGCTCTCTGGTCAGTCAATGTCAACAAGCAGAAGTGTTGGCTCGCCGTCCAGCCGGAGTGAACAGACAATGGCAACGCCATCTAGTGATAACACTTGTCTTAGATTAAACCATCTTGACATACATGGTGATGATGCTGGATCACAGGGCGCAGTTGCAAGCAAGAAGAAAAAGAGAGGCCAACGTGCTGTTGGAGGGGATAAGAGTGGAAGAGGGCTCCGCCAATTTAGTATGAAAGTGTGTGAGAAGGTGGAAAGCAAGGGAAGAACAACTTATAACGAGGTAGCAGATGAACTTGTGGCTGAATTTGCTGATCCAAGCAATAGTGTTTCTTCCCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTCTATGATGCTTTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAAGAAATACAATGGAAGGGTCTTCCTCGTACTAGTCTGAATGATATTGAAGAACTAAAGACGGAGCGTCTTGGGCTGAGGAATAGAATTGAAAAGAAAGCAGCCTATTTGCAAGAACTGGAGGAACAATACATAGGTCTTCAGCACCTTATACAACGAAATGAACAATTATATAGCTCAGGAAATGTTCCCAATGGAGTATATTTGCCTTTTATTCTGGTGCAGACACGCCCCCATGCTACTGTTGAATTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGCACTCCTTTTGAGCTGCATGATGACAGCTATGTTCTCAAGGCAATGGAATTTTGTCCGAGACTTCAGAATGATAATATAACACACAATCCTACAGAGGGAGGCGAAGGTTCTAGCATGTCAGGCTTGTATCAAGCACAGGTTCCTACCTTAGTTTCAAACCCGTCAGTTAGGCTTCCTTCATCACCTCCACTCCCTGGAATATTAAAGGCAAGAGTTAAGAATGAGCATTAA 1245 0.4458 MDRNGSSISGPVFQACQNLGVACSYRSYSWSRSLGPVVPLHLQPQVFSASEVNTAQRFSGYGFLNFSGKQLTKMGTQPQQRCREEEEEEMPGRGTTLSGQSMSTSRSVGSPSSRSEQTMATPSSDNTCLRLNHLDIHGDDAGSQGAVASKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSVSSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKTERLGLRNRIEKKAAYLQELEEQYIGLQHLIQRNEQLYSSGNVPNGVYLPFILVQTRPHATVELEISEDMQLVHFDFNSTPFELHDDSYVLKAMEFCPRLQNDNITHNPTEGGEGSSMSGLYQAQVPTLVSNPSVRLPSSPPLPGILKARVKNEH 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi374g00016 414 SMART DP_2 253 412 IPR014889 -
Gabi374g00016 414 Pfam E2F/DP family winged-helix DNA-binding domain 166 246 IPR003316 GO:0005667|GO:0006355
Gabi374g00016 414 SUPERFAMILY E2F-DP heterodimerization region 252 368 IPR037241 -
Gabi374g00016 414 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Gabi374g00016 414 Pfam Transcription factor DP 254 371 IPR014889 -
Gabi374g00016 414 MobiDBLite consensus disorder prediction 391 414 - -
Gabi374g00016 414 Coils Coil 262 296 - -
Gabi374g00016 414 Gene3D Transcription factor DP 252 378 IPR038168 -
Gabi374g00016 414 CDD DP_DD 251 353 IPR014889 -
Gabi374g00016 414 MobiDBLite consensus disorder prediction 94 130 - -
Gabi374g00016 414 Gene3D - 158 251 IPR036388 -
Gabi374g00016 414 SMART E2F_TDP_2 163 246 IPR003316 GO:0005667|GO:0006355
Gabi374g00016 414 MobiDBLite consensus disorder prediction 72 166 - -
Gabi374g00016 414 SUPERFAMILY "Winged helix" DNA-binding domain 166 247 IPR036390 -
Gabi374g00016 414 FunFam Transcription factor-like protein DPB 158 251 - -
Gabi374g00016 414 PANTHER TRANSCRIPTION FACTOR DP 95 370 IPR015648 GO:0005667|GO:0051726
Gabi374g00016 414 FunFam Transcription factor-like protein DPB 252 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi374g00016 Gabi-Chr374 77193 83414 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi374g00016 164 361 E2F-DP Transcription Factor Family AT5G02470 55.500 6.69e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gabi374g00016 DP 4.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi374g00016 K04683 - gmx:100781272 555.444