Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi374g00015 ATGGACCGGAACGGTTCATCCATTTCCGGTCCGGTTTTTCAAGCATGTCAAAACCTAGGCGTGGCGTGCTCGTATCGCAGTTACTCTTGGTCACGGTCACTTGGTCCGGTGGTCCCCCTTCATCTTCAACCTCAGGTGTTCTCTGCCTCTGAGGTCAACACTGCACAACGCTTTAGCGGTTATGGCTTCTTAAATTTCTCAGGTAAGCAACTTACTAAGATGGGAACACAGCCCCAGCAAAGATGTCGGGAGGAAGAGGAGGAGGAGATGCCAGGTCGTGGAACTACGCTCTCTGGTCAGTCAATGTCAACAAGCAGAAGTGTTGGCTCGCCGTCCAGCCGGAGTGAACAGACAATGGCAACGCCATCTAGTGATAACACTTGTCTTAGATTAAACCATCTTGACATACATGGTGATGATGCTGGATCACAGGGCGCAGTTGCCAAGAAGAAAAAGAGAGGCCAACGTGCTGTTGGAGGGGATAAGAGTGGAAGAGGGCTCCGCCAATTTAGTATGAAAGTGTGTGAGAAGGTGGAAAGCAAGGGAAGAACAACTTATAACGAGGTAGCAGATGAACTTGTGGCTGAATTTGCTGATCCAAGCAATAGTGTTTCTTCCCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTCTATGATGCTTTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAAGAAATACAATGGAAGGGTCTTCCTCGTACTAGTCTGAATGATATTGAAGAACTAAAGACGGAGCGTCTTGGGCTGAGGAATAGAATTGAAAAGAAAGCAGCCTATTTGCAAGAACTGGAGGAACAATACATAGGTCTTCAGCACCTTATACAACGAAATGAACAATTATATAGCTCAGGAAATGTTCCCAATGGAGTATATTTGCCTTTTATTCTGGTGCAGACACGCCCCCATGCTACTGTTGAATTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGCACTCCTTTTGAGCTGCATGATGACAGCTATGTTCTCAAGGCAATGGAATTTTGTCCGAGACTTCAGAATGATAATATAACACACAATCCTACAGAGGGAGGCGAAGGTTCTAGCATGTCAGGCTTGTATCAAGCACAGGTTCCTACCTTAGTTTCAAACCCGTCAGTTAGGCTTCCTTCATCACCTCCACTCCCTGGAATATTAAAGGCAAGAGTTAAGAATGAGCATTAA 1242 0.4461 MDRNGSSISGPVFQACQNLGVACSYRSYSWSRSLGPVVPLHLQPQVFSASEVNTAQRFSGYGFLNFSGKQLTKMGTQPQQRCREEEEEEMPGRGTTLSGQSMSTSRSVGSPSSRSEQTMATPSSDNTCLRLNHLDIHGDDAGSQGAVAKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSVSSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKTERLGLRNRIEKKAAYLQELEEQYIGLQHLIQRNEQLYSSGNVPNGVYLPFILVQTRPHATVELEISEDMQLVHFDFNSTPFELHDDSYVLKAMEFCPRLQNDNITHNPTEGGEGSSMSGLYQAQVPTLVSNPSVRLPSSPPLPGILKARVKNEH 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi374g00015 413 Gene3D - 158 250 IPR036388 -
Gabi374g00015 413 MobiDBLite consensus disorder prediction 390 413 - -
Gabi374g00015 413 FunFam Transcription factor-like protein DPB 157 250 - -
Gabi374g00015 413 Coils Coil 261 295 - -
Gabi374g00015 413 SMART DP_2 252 411 IPR014889 -
Gabi374g00015 413 CDD DP_DD 250 352 IPR014889 -
Gabi374g00015 413 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Gabi374g00015 413 FunFam Transcription factor-like protein DPB 251 374 - -
Gabi374g00015 413 SUPERFAMILY "Winged helix" DNA-binding domain 165 246 IPR036390 -
Gabi374g00015 413 MobiDBLite consensus disorder prediction 94 130 - -
Gabi374g00015 413 SUPERFAMILY E2F-DP heterodimerization region 251 367 IPR037241 -
Gabi374g00015 413 Gene3D Transcription factor DP 251 377 IPR038168 -
Gabi374g00015 413 PANTHER TRANSCRIPTION FACTOR DP 95 369 IPR015648 GO:0005667|GO:0051726
Gabi374g00015 413 MobiDBLite consensus disorder prediction 72 165 - -
Gabi374g00015 413 Pfam E2F/DP family winged-helix DNA-binding domain 165 245 IPR003316 GO:0005667|GO:0006355
Gabi374g00015 413 Pfam Transcription factor DP 253 370 IPR014889 -
Gabi374g00015 413 SMART E2F_TDP_2 162 245 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi374g00015 Gabi-Chr374 77193 83418 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi374g00015 163 360 E2F-DP Transcription Factor Family AT5G02470 55.500 5.96e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gabi374g00015 DP 4.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi374g00015 K04683 - gmx:100797603 558.525