Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi374g00014 ATGTCCTTTCACTTGGGCTTGGGCTTCAGTTACTCTTGGTCACGGTCACTTGGTCCGGTGGTCCCCCTTCATCTTCAACCTCAGGTGTTCTCTGCCTCTGAGGTCAACACTGCACAACGCTTTAGCGGTTATGGCTTCTTAAATTTCTCAGGTAAGCAACTTACTAAGATGGGAACACAGCCCCAGCAAAGATGTCGGGAGGAAGAGGAGGAGGAGATGCCAGGTCGTGGAACTACGCTCTCTGGTCAGTCAATGTCAACAAGCAGAAGTGTTGGCTCGCCGTCCAGCCGGAGTGAACAGACAATGGCAACGCCATCTAGTGATAACACTTGTCTTAGATTAAACCATCTTGACATACATGGTGATGATGCTGGATCACAGGGCGCAGTTGCAAGCAAGAAGAAAAAGAGAGGCCAACGTGCTGTTGGAGGGGATAAGAGTGGAAGAGGGCTCCGCCAATTTAGTATGAAAGTGTGTGAGAAGGTGGAAAGCAAGGGAAGAACAACTTATAACGAGGTAGCAGATGAACTTGTGGCTGAATTTGCTGATCCAAGCAATAGTGTTTCTTCCCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTCTATGATGCTTTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAAGAAATACAATGGAAGGGTCTTCCTCGTACTAGTCTGAATGATATTGAAGAACTAAAGACGGAGCGTCTTGGGCTGAGGAATAGAATTGAAAAGAAAGCAGCCTATTTGCAAGAACTGGAGGAACAATACATAGGTCTTCAGCACCTTATACAACGAAATGAACAATTATATAGCTCAGGAAATGTTCCCAATGGAGTATATTTGCCTTTTATTCTGGTGCAGACACGCCCCCATGCTACTGTTGAATTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGCACTCCTTTTGAGCTGCATGATGACAGCTATGTTCTCAAGGCAATGGAATTTTGTCCGAGACTTCAGAATGATAATATAACACACAATCCTACAGAGGGAGGCGAAGGTTCTAGCATGTCAGGCTTGTATCAAGCACAGGTTCCTACCTTAGTTTCAAACCCGTCAGTTAGGCTTCCTTCATCACCTCCACTCCCTGGAATATTAAAGGCAAGAGTTAAGAATGAGCATTAA 1194 0.4414 MSFHLGLGFSYSWSRSLGPVVPLHLQPQVFSASEVNTAQRFSGYGFLNFSGKQLTKMGTQPQQRCREEEEEEMPGRGTTLSGQSMSTSRSVGSPSSRSEQTMATPSSDNTCLRLNHLDIHGDDAGSQGAVASKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSVSSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKTERLGLRNRIEKKAAYLQELEEQYIGLQHLIQRNEQLYSSGNVPNGVYLPFILVQTRPHATVELEISEDMQLVHFDFNSTPFELHDDSYVLKAMEFCPRLQNDNITHNPTEGGEGSSMSGLYQAQVPTLVSNPSVRLPSSPPLPGILKARVKNEH 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi374g00014 397 Gene3D Transcription factor DP 235 361 IPR038168 -
Gabi374g00014 397 CDD DP_DD 234 336 IPR014889 -
Gabi374g00014 397 MobiDBLite consensus disorder prediction 55 149 - -
Gabi374g00014 397 SUPERFAMILY "Winged helix" DNA-binding domain 149 230 IPR036390 -
Gabi374g00014 397 Coils Coil 245 279 - -
Gabi374g00014 397 MobiDBLite consensus disorder prediction 77 113 - -
Gabi374g00014 397 MobiDBLite consensus disorder prediction 374 397 - -
Gabi374g00014 397 FunFam Transcription factor-like protein DPB 235 358 - -
Gabi374g00014 397 PIRSF Txn_factor_DP 54 397 IPR015648 GO:0005667|GO:0051726
Gabi374g00014 397 SMART E2F_TDP_2 146 229 IPR003316 GO:0005667|GO:0006355
Gabi374g00014 397 SMART DP_2 236 395 IPR014889 -
Gabi374g00014 397 PANTHER TRANSCRIPTION FACTOR DP 78 353 IPR015648 GO:0005667|GO:0051726
Gabi374g00014 397 SUPERFAMILY E2F-DP heterodimerization region 235 351 IPR037241 -
Gabi374g00014 397 FunFam Transcription factor-like protein DPB 141 234 - -
Gabi374g00014 397 Gene3D - 141 234 IPR036388 -
Gabi374g00014 397 Pfam E2F/DP family winged-helix DNA-binding domain 149 229 IPR003316 GO:0005667|GO:0006355
Gabi374g00014 397 Pfam Transcription factor DP 237 354 IPR014889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi374g00014 Gabi-Chr374 76689 83413 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi374g00014 147 344 E2F-DP Transcription Factor Family AT5G02470 55.500 4.24e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gabi374g00014 DP 4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi374g00014 K04683 - gmx:100781272 555.444