Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi374g00013 ATGGAAGATGCACCAAAAACTGGGGAAGATTCATTTCTTGATAACAACAAACATTTGGAACTTATTGATAATTCATTGCAAGTTTGCCCAGATGTGGGCTTCCAAATTGCTTCAGATAATAAGGATGCAATATTTGATAGCAATATTCATTCCAATTTTAGTTTTGCAAGAGAACAAGAGGTAGTGTCTATGGAGTTTGGATTGGATCCTTTCAGTAACACCCTCCCGGATCCTGGCACTAGGAATGCTCGTAAGTTTCAACCCAAGATTAAGCCACGACCCAGAGTAGGCAATACAACAATTATTGCTTCTGCTTCATCTAGTGTTATGATGGAAAAATCTGTTGAGTTGCCTTCATGCACAAATGAAGTTCAACCTTTTCAATCTAGTGGTGATGGCAATGGTGGGCTAAACCAATCCACCAGTTTACCTTTACCCACATCAGAGATTCTTAGTTCAGCCAATTTATCCAATAAGTCTGATTATATGAGCTCAAATATTCCAGTCTCTGAAGACAACAGAAGCTTGACAACAGTAATTCCTTCCCAACTGGATTCCCTGAATGCTATGCTTTCAGAGGTTGCAGTTCATAATGGAAGTAGAGATTCGCCTTCTAGTTTTGGTAAATCAGCTGGAGAGACTGCAGACATTTTCTCTGGGTTGGAAACCCTTGATTACTTTCTCACCCAAAATGCCACTGATACAGGAAAACCAGCTCTTCATTCTTTCAATGAGAAGGGTTCAGAGGAAAATTTTGTTGTTCCAGCTTGTAGTTCTATTAATTCTTTTGGGGCATGTGATACTGCCCAAGTTCAAACGTGTCCAGAGTATCACACCACCCAAGATTCATTAACCTTCAATGAAACTGAAGTCCTCAATGTGAATGATACTCACTCTAACAATAGAAAGCCAGAAACAGAGAATGTTGTGGACCTGAATCCTGCCAGCCCTGTTGACAATGTCTTTGATTATCAATCCATGAAATCTGGCACAGACCCAACTTCTGAAATTCCAGTGCATGAAGAACTGACAAATGCTGCCGATAGTCCCACATTGGCTGATATTCTGCATGCAGATGTTACTGGGGAAAAAGAAGATGCTAATGAGAGAAAAAAAGATGGCACAATTTCAAGTTCTCCAAGGAAGCGTAGAAGATCTTCTATTGCTAATGAAGAGGATAAAAATGGTAAAACCTCAAGGCAGCTGAGGAAACAAGCATGTCGCAAACCTGCCAACAACTCGTTGAATGAGGATGAGGATGACCTTGACCCCCTTTCTGATTCTAATAGAGATGAACTTGAAGAAAATGATGATGAATTTGAAGTGGATTATTCATCCAATAAGAAAAGGGCATCAGCAAGTTCAAAGAAGAAATCTGTTGCTAAAACTGCAAAAACGTCTCAAAAGCGTAAAAAGGCTAATGATGATTCAGAAAAAACTACTAAAGAACCTCCTAAAAAGTTTTCTCATTCAACCAGACGGAGAAAAAGATGTGTGGACAAGGCTCTGCTGGAAATTCCTGAAGATGAACTGGATCCTCGAACATTGCCTATTAAGGATATTATTTTACTTGCAGAACATAGGGAACGGCGGGCGAAAAAGGAGGCAACAACTTCAAAAGCATTTTCCACCAATCAAAGCGGTGGAGATTCCCTTCATGAGGCTGGTGCTAATAATGAAGAGGAGACCTTAGGTTCAGAAGATGGTAGAGACACCGGCGATGATCAAGCCAGTGAGAGTATTCCATTTGCTTCGTCTTTATTCAATTACCAGTCTTTCATGGACAAGGCACCTAGGGGAAAATGGTCAAAACAAGATACTGAACTGTTTTATGAGGCTATTAGGCAGTTTGGCACAGATTTTTCTATGATACAACAGCTTTTTCCTGGTCGAACACGTCATCAGGTTAAGTTGAAGTACAAGAAGGAAGAGCGCCAGCATCCTTTACTGTTATCTGATGCTGTAAATAATCGTGCTAAAGATCACTATCATTTTAAATTGGTGATTGAGCGACTGCAACAAGCTTCCACAAAGGCAGAAAAAGACCCCGGCAGAGATGCTTCAGATTTCATGACTGGGGAGGAGGTTGAGGACTTGACACCTGGAACTAATGAGGAGGTTGCAACAACTCAGCAAGACGAGATTGCGACAACTCAGAAAGACAAGATTGCGACAACTCAGCAGGACGCCCATGTCAAAGATCAGGAAGATTGTATGGCTTTCAAAGATGATAGTGATGATAGTGATGATGAATTTCAAAGATGGTCTCAGTATAAAAGTGATTATTAA 2289 0.405 MEDAPKTGEDSFLDNNKHLELIDNSLQVCPDVGFQIASDNKDAIFDSNIHSNFSFAREQEVVSMEFGLDPFSNTLPDPGTRNARKFQPKIKPRPRVGNTTIIASASSSVMMEKSVELPSCTNEVQPFQSSGDGNGGLNQSTSLPLPTSEILSSANLSNKSDYMSSNIPVSEDNRSLTTVIPSQLDSLNAMLSEVAVHNGSRDSPSSFGKSAGETADIFSGLETLDYFLTQNATDTGKPALHSFNEKGSEENFVVPACSSINSFGACDTAQVQTCPEYHTTQDSLTFNETEVLNVNDTHSNNRKPETENVVDLNPASPVDNVFDYQSMKSGTDPTSEIPVHEELTNAADSPTLADILHADVTGEKEDANERKKDGTISSSPRKRRRSSIANEEDKNGKTSRQLRKQACRKPANNSLNEDEDDLDPLSDSNRDELEENDDEFEVDYSSNKKRASASSKKKSVAKTAKTSQKRKKANDDSEKTTKEPPKKFSHSTRRRKRCVDKALLEIPEDELDPRTLPIKDIILLAEHRERRAKKEATTSKAFSTNQSGGDSLHEAGANNEEETLGSEDGRDTGDDQASESIPFASSLFNYQSFMDKAPRGKWSKQDTELFYEAIRQFGTDFSMIQQLFPGRTRHQVKLKYKKEERQHPLLLSDAVNNRAKDHYHFKLVIERLQQASTKAEKDPGRDASDFMTGEEVEDLTPGTNEEVATTQQDEIATTQKDKIATTQQDAHVKDQEDCMAFKDDSDDSDDEFQRWSQYKSDY 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi374g00013 762 CDD SANT 601 642 IPR001005 -
Gabi374g00013 762 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 594 650 IPR017930 -
Gabi374g00013 762 ProSiteProfiles Myb-like domain profile. 594 644 IPR001005 -
Gabi374g00013 762 SUPERFAMILY Homeodomain-like 600 648 IPR009057 -
Gabi374g00013 762 MobiDBLite consensus disorder prediction 538 553 - -
Gabi374g00013 762 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B 81 762 - -
Gabi374g00013 762 MobiDBLite consensus disorder prediction 123 146 - -
Gabi374g00013 762 Gene3D - 602 665 - -
Gabi374g00013 762 ProSiteProfiles SANT domain profile. 601 645 IPR017884 -
Gabi374g00013 762 MobiDBLite consensus disorder prediction 361 512 - -
Gabi374g00013 762 MobiDBLite consensus disorder prediction 73 94 - -
Gabi374g00013 762 MobiDBLite consensus disorder prediction 451 467 - -
Gabi374g00013 762 MobiDBLite consensus disorder prediction 695 762 - -
Gabi374g00013 762 SMART sant 598 646 IPR001005 -
Gabi374g00013 762 Pfam Myb DNA-binding like 592 675 IPR039467 -
Gabi374g00013 762 MobiDBLite consensus disorder prediction 747 762 - -
Gabi374g00013 762 MobiDBLite consensus disorder prediction 703 725 - -
Gabi374g00013 762 MobiDBLite consensus disorder prediction 417 441 - -
Gabi374g00013 762 MobiDBLite consensus disorder prediction 726 740 - -
Gabi374g00013 762 MobiDBLite consensus disorder prediction 361 400 - -
Gabi374g00013 762 MobiDBLite consensus disorder prediction 468 487 - -
Gabi374g00013 762 MobiDBLite consensus disorder prediction 498 512 - -
Gabi374g00013 762 MobiDBLite consensus disorder prediction 296 317 - -
Gabi374g00013 762 MobiDBLite consensus disorder prediction 530 578 - -
Gabi374g00013 762 FunFam Predicted protein 602 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi374g00013 Gabi-Chr374 66729 74230 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi374g00013 Myb_DNA-bind_7 2e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi374g00013 K15198 - gmx:100792788 934.095