Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi374g00012 ATGCTGATCGGAATCTTACACACTTTCCAAAATCAGCATGCAGATCCTGTAGGTTTTGATGTGGGCCGAGTCGCTAACTCCATTCCTGAGTCCAGCCTCAACAACGGCACAACACAATCAGTTCACCCTGCTAATCCTGTAGAAAATGAATTGAGTAGCGTGGCTGCTCCATCTACATCTTGTTCAACCATAGGTAGGATGGAAGATGCACCAAAAACTGGGGAAGATTCATTTCTTGATAACAACAAACATTTGGAACTTATTGATAATTCATTGCAAGTTTGCCCAGATGTGGGCTTCCAAATTGCTTCAGATAATAAGGATGCAATATTTGATAGCAATATTCATTCCAATTTTAGTTTTGCAAGAGAACAAGAGGTAGTGTCTATGGAGTTTGGATTGGATCCTTTCAGTAACACCCTCCCGGATCCTGGCACTAGGAATGCTCGTAAGTTTCAACCCAAGATTAAGCCACGACCCAGAGTAGGCAATACAACAATTATTGCTTCTGCTTCATCTAGTGTTATGATGGAAAAATCTGTTGAGTTGCCTTCATGCACAAATGAAGTTCAACCTTTTCAATCTAGTGGTGATGGCAATGGTGGGCTAAACCAATCCACCAGTTTACCTTTACCCACATCAGAGATTCTTAGTTCAGCCAATTTATCCAATAAGTCTGATTATATGAGCTCAAATATTCCAGTCTCTGAAGACAACAGAAGCTTGACAACAGTAATTCCTTCCCAACTGGATTCCCTGAATGCTATGCTTTCAGAGGTTGCAGTTCATAATGGAAGTAGAGATTCGCCTTCTAGTTTTGGTAAATCAGCTGGAGAGACTGCAGACATTTTCTCTGGGTTGGAAACCCTTGATTACTTTCTCACCCAAAATGCCACTGATACAGGAAAACCAGCTCTTCATTCTTTCAATGAGAAGGGTTCAGAGGAAAATTTTGTTGTTCCAGCTTGTAGTTCTATTAATTCTTTTGGGGCATGTGATACTGCCCAAGTTCAAACGTGTCCAGAGTATCACACCACCCAAGATTCATTAACCTTCAATGAAACTGAAGTCCTCAATGTGAATGATACTCACTCTAACAATAGAAAGCCAGAAACAGAGAATGTTGTGGACCTGAATCCTGCCAGCCCTGTTGACAATGTCTTTGATTATCAATCCATGAAATCTGGCACAGACCCAACTTCTGAAATTCCAGTGCATGAAGAACTGACAAATGCTGCCGATAGTCCCACATTGGCTGATATTCTGCATGCAGATGTTACTGGGGAAAAAGAAGATGCTAATGAGAGAAAAAAAGATGGCACAATTTCAAGTTCTCCAAGGAAGCGTAGAAGATCTTCTATTGCTAATGAAGAGGATAAAAATGGTAAAACCTCAAGGCAGCTGAGGAAACAAGCATGTCGCAAACCTGCCAACAACTCGTTGAATGAGGATGAGGATGACCTTGACCCCCTTTCTGATTCTAATAGAGATGAACTTGAAGAAAATGATGATGAATTTGAAGTGGATTATTCATCCAATAAGAAAAGGGCATCAGCAAGTTCAAAGAAGAAATCTGTTGCTAAAACTGCAAAAACGTCTCAAAAGCGTAAAAAGGCTAATGATGATTCAGAAAAAACTACTAAAGAACCTCCTAAAAAGTTTTCTCATTCAACCAGACGGAGAAAAAGATGTGTGGACAAGGCTCTGCTGGAAATTCCTGAAGATGAACTGGATCCTCGAACATTGCCTATTAAGGATATTATTTTACTTGCAGAACATAGGGAACGGCGGGCGAAAAAGGAGGCAACAACTTCAAAAGCATTTTCCACCAATCAAAGCGGTGGAGATTCCCTTCATGAGGCTGGTGCTAATAATGAAGAGGAGACCTTAGGTTCAGAAGATGGTAGAGACACCGGCGATGATCAAGCCAGTGAGAGTATTCCATTTGCTTCGTCTTTATTCAATTACCAGTCTTTCATGGACAAGGCACCTAGGGGAAAATGGTCAAAACAAGATACTGAACTGTTTTATGAGGCTATTAGGCAGTTTGGCACAGATTTTTCTATGATACAACAGCTTTTTCCTGGTCGAACACGTCATCAGGTTAAGTTGAAGTACAAGAAGGAAGAGCGCCAGCATCCTTTACTGTTATCTGATGCTGTAAATAATCGTGCTAAAGATCACTATCATTTTAAATTGGTGATTGAGCGACTGCAACAAGCTTCCACAAAGGCAGAAAAAGACCCCGGCAGAGATGCTTCAGATTTCATGACTGGGGAGGAGGTTGAGGACTTGACACCTGGAACTAATGAGGAGGTTGCAACAACTCAGCAAGACGAGATTGCGACAACTCAGAAAGACAAGATTGCGACAACTCAGCAGGACGCCCATGTCAAAGATCAGGAAGATTGTATGGCTTTCAAAGATGATAGTGATGATAGTGATGATGAATTTCAAAGATGGTCTCAGTATAAAAGTGATTATTAA 2487 0.4097 MLIGILHTFQNQHADPVGFDVGRVANSIPESSLNNGTTQSVHPANPVENELSSVAAPSTSCSTIGRMEDAPKTGEDSFLDNNKHLELIDNSLQVCPDVGFQIASDNKDAIFDSNIHSNFSFAREQEVVSMEFGLDPFSNTLPDPGTRNARKFQPKIKPRPRVGNTTIIASASSSVMMEKSVELPSCTNEVQPFQSSGDGNGGLNQSTSLPLPTSEILSSANLSNKSDYMSSNIPVSEDNRSLTTVIPSQLDSLNAMLSEVAVHNGSRDSPSSFGKSAGETADIFSGLETLDYFLTQNATDTGKPALHSFNEKGSEENFVVPACSSINSFGACDTAQVQTCPEYHTTQDSLTFNETEVLNVNDTHSNNRKPETENVVDLNPASPVDNVFDYQSMKSGTDPTSEIPVHEELTNAADSPTLADILHADVTGEKEDANERKKDGTISSSPRKRRRSSIANEEDKNGKTSRQLRKQACRKPANNSLNEDEDDLDPLSDSNRDELEENDDEFEVDYSSNKKRASASSKKKSVAKTAKTSQKRKKANDDSEKTTKEPPKKFSHSTRRRKRCVDKALLEIPEDELDPRTLPIKDIILLAEHRERRAKKEATTSKAFSTNQSGGDSLHEAGANNEEETLGSEDGRDTGDDQASESIPFASSLFNYQSFMDKAPRGKWSKQDTELFYEAIRQFGTDFSMIQQLFPGRTRHQVKLKYKKEERQHPLLLSDAVNNRAKDHYHFKLVIERLQQASTKAEKDPGRDASDFMTGEEVEDLTPGTNEEVATTQQDEIATTQKDKIATTQQDAHVKDQEDCMAFKDDSDDSDDEFQRWSQYKSDY 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi374g00012 828 MobiDBLite consensus disorder prediction 51 66 - -
Gabi374g00012 828 SUPERFAMILY Homeodomain-like 666 714 IPR009057 -
Gabi374g00012 828 MobiDBLite consensus disorder prediction 427 578 - -
Gabi374g00012 828 MobiDBLite consensus disorder prediction 534 553 - -
Gabi374g00012 828 MobiDBLite consensus disorder prediction 483 507 - -
Gabi374g00012 828 ProSiteProfiles Myb-like domain profile. 660 710 IPR001005 -
Gabi374g00012 828 MobiDBLite consensus disorder prediction 427 466 - -
Gabi374g00012 828 MobiDBLite consensus disorder prediction 362 383 - -
Gabi374g00012 828 CDD SANT 667 708 IPR001005 -
Gabi374g00012 828 MobiDBLite consensus disorder prediction 517 533 - -
Gabi374g00012 828 MobiDBLite consensus disorder prediction 564 578 - -
Gabi374g00012 828 MobiDBLite consensus disorder prediction 596 644 - -
Gabi374g00012 828 ProSiteProfiles SANT domain profile. 667 711 IPR017884 -
Gabi374g00012 828 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B 147 828 - -
Gabi374g00012 828 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 660 716 IPR017930 -
Gabi374g00012 828 MobiDBLite consensus disorder prediction 51 77 - -
Gabi374g00012 828 Pfam Myb DNA-binding like 658 741 IPR039467 -
Gabi374g00012 828 MobiDBLite consensus disorder prediction 604 619 - -
Gabi374g00012 828 MobiDBLite consensus disorder prediction 813 828 - -
Gabi374g00012 828 FunFam Predicted protein 668 747 - -
Gabi374g00012 828 MobiDBLite consensus disorder prediction 761 828 - -
Gabi374g00012 828 Gene3D - 668 731 - -
Gabi374g00012 828 MobiDBLite consensus disorder prediction 792 806 - -
Gabi374g00012 828 MobiDBLite consensus disorder prediction 188 212 - -
Gabi374g00012 828 MobiDBLite consensus disorder prediction 769 791 - -
Gabi374g00012 828 SMART sant 664 712 IPR001005 -
Gabi374g00012 828 MobiDBLite consensus disorder prediction 139 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi374g00012 Gabi-Chr374 66728 74324 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi374g00012 Myb_DNA-bind_7 2.2e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi374g00012 K15198 - gmx:100792788 983.786