Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi374g00011 ATGGATCTTTTTGATGATATTCTACCTGTAGCTCCTCCTGCACGAGCTCGGCCGGGTGGTAAGTTTATCCCTAAGGCCAAACCGAAACAGCTGCCTCGAAAGGAAATATCTGCATCAGAACATGCAACCTCATCTAAAGATGGAAAGAATGTGCCTGTTACTTCATCATCTACCTGCTCAGAAGGAATTTCTTTGAATGAATGTCATAATGCAGTTGCTTCAACTTTAAGTATGTCAGCGGAAGAACATACGAGGTCTAATCATCGTCCACAGGTAGAACATCCAAATTTGGAGGATGCCACAAATTCTGAAATGGGAAATCCTCAACAAGTTAGTGAAAATGGAGATGCTGCAGCTTTAGTTGATGCTCTGCCTTCCACGATGACGGCCTCTGAAGTCGATGCTGATCGGAATCTTACACACTTTCCAAAATCAGCATGTGAGGCAGATCCTGTAGGTTTTGATGTGGGCCGAGTCGCTAACTCCATTCCTGAGTCCAGCCTCAACAACGGCACAACACAATCAGTTCACCCTGCTAATCCTGTAGAAAATGAATTGAGTAGCGTGGCTGCTCCATCTACATCTTGTTCAACCATAGGTAGGATGGAAGATGCACCAAAAACTGGGGAAGATTCATTTCTTGATAACAACAAACATTTGGAACTTATTGATAATTCATTGCAAGTTTGCCCAGATGTGGGCTTCCAAATTGCTTCAGATAATAAGGATGCAATATTTGATAGCAATATTCATTCCAATTTTAGTTTTGCAAGAGAACAAGAGGTAGTGTCTATGGAGTTTGGATTGGATCCTTTCAGTAACACCCTCCCGGATCCTGGCACTAGGAATGCTCGTAAGTTTCAACCCAAGATTAAGCCACGACCCAGAGTAGGCAATACAACAATTATTGCTTCTGCTTCATCTAGTGTTATGATGGAAAAATCTGTTGAGTTGCCTTCATGCACAAATGAAGTTCAACCTTTTCAATCTAGTGGTGATGGCAATGGTGGGCTAAACCAATCCACCAGTTTACCTTTACCCACATCAGAGATTCTTAGTTCAGCCAATTTATCCAATAAGTCTGATTATATGAGCTCAAATATTCCAGTCTCTGAAGACAACAGAAGCTTGACAACAGTAATTCCTTCCCAACTGGATTCCCTGAATGCTATGCTTTCAGAGGTTGCAGTTCATAATGGAAGTAGAGATTCGCCTTCTAGTTTTGGTAAATCAGCTGGAGAGACTGCAGACATTTTCTCTGGGTTGGAAACCCTTGATTACTTTCTCACCCAAAATGCCACTGATACAGGAAAACCAGCTCTTCATTCTTTCAATGAGAAGGGTTCAGAGGAAAATTTTGTTGTTCCAGCTTGTAGTTCTATTAATTCTTTTGGGGCATGTGATACTGCCCAAGTTCAAACGTGTCCAGAGTATCACACCACCCAAGATTCATTAACCTTCAATGAAACTGAAGTCCTCAATGTGAATGATACTCACTCTAACAATAGAAAGCCAGAAACAGAGAATGTTGTGGACCTGAATCCTGCCAGCCCTGTTGACAATGTCTTTGATTATCAATCCATGAAATCTGGCACAGACCCAACTTCTGAAATTCCAGTGCATGAAGAACTGACAAATGCTGCCGATAGTCCCACATTGGCTGATATTCTGCATGCAGATGTTACTGGGGAAAAAGAAGATGCTAATGAGAGAAAAAAAGATGGCACAATTTCAAGTTCTCCAAGGAAGCGTAGAAGATCTTCTATTGCTAATGAAGAGGATAAAAATGGTAAAACCTCAAGGCAGCTGAGGAAACAAGCATGTCGCAAACCTGCCAACAACTCGTTGAATGAGGATGAGGATGACCTTGACCCCCTTTCTGATTCTAATAGAGATGAACTTGAAGAAAATGATGATGAATTTGAAGTGGATTATTCATCCAATAAGAAAAGGGCATCAGCAAGTTCAAAGAAGAAATCTGTTGCTAAAACTGCAAAAACGTCTCAAAAGCGTAAAAAGGCTAATGATGATTCAGAAAAAACTACTAAAGAACCTCCTAAAAAGTTTTCTCATTCAACCAGACGGAGAAAAAGATGTGTGGACAAGGCTCTGCTGGAAATTCCTGAAGATGAACTGGATCCTCGAACATTGCCTATTAAGGATATTATTTTACTTGCAGAACATAGGGAACGGCGGGCGAAAAAGGAGGCAACAACTTCAAAAGCATTTTCCACCAATCAAAGCGGTGGAGATTCCCTTCATGAGGCTGGTGCTAATAATGAAGAGGAGACCTTAGGTTCAGAAGATGGTAGAGACACCGGCGATGATCAAGCCAGTGAGAGTATTCCATTTGCTTCGTCTTTATTCAATTACCAGTCTTTCATGGACAAGGCACCTAGGGGAAAATGGTCAAAACAAGATACTGAACTGTTTTATGAGGCTATTAGGCAGTTTGGCACAGATTTTTCTATGATACAACAGCTTTTTCCTGGTCGAACACGTCATCAGGTTAAGTTGAAGTACAAGAAGGAAGAGCGCCAGCATCCTTTACTGTTATCTGATGCTGTAAATAATCGTGCTAAAGATCACTATCATTTTAAATTGGTGATTGAGCGACTGCAACAAGCTTCCACAAAGGCAGAAAAAGACCCCGGCAGAGATGCTTCAGATTTCATGACTGGGGAGGAGGTTGAGGACTTGACACCTGGAACTAATGAGGAGGTTGCAACAACTCAGCAAGACGAGATTGCGACAACTCAGAAAGACAAGATTGCGACAACTCAGCAGGACGCCCATGTCAAAGATCAGGAAGATTGTATGGCTTTCAAAGATGATAGTGATGATAGTGATGATGAATTTCAAAGATGGTCTCAGTATAAAAGTGATTATTAA 2892 0.4139 MDLFDDILPVAPPARARPGGKFIPKAKPKQLPRKEISASEHATSSKDGKNVPVTSSSTCSEGISLNECHNAVASTLSMSAEEHTRSNHRPQVEHPNLEDATNSEMGNPQQVSENGDAAALVDALPSTMTASEVDADRNLTHFPKSACEADPVGFDVGRVANSIPESSLNNGTTQSVHPANPVENELSSVAAPSTSCSTIGRMEDAPKTGEDSFLDNNKHLELIDNSLQVCPDVGFQIASDNKDAIFDSNIHSNFSFAREQEVVSMEFGLDPFSNTLPDPGTRNARKFQPKIKPRPRVGNTTIIASASSSVMMEKSVELPSCTNEVQPFQSSGDGNGGLNQSTSLPLPTSEILSSANLSNKSDYMSSNIPVSEDNRSLTTVIPSQLDSLNAMLSEVAVHNGSRDSPSSFGKSAGETADIFSGLETLDYFLTQNATDTGKPALHSFNEKGSEENFVVPACSSINSFGACDTAQVQTCPEYHTTQDSLTFNETEVLNVNDTHSNNRKPETENVVDLNPASPVDNVFDYQSMKSGTDPTSEIPVHEELTNAADSPTLADILHADVTGEKEDANERKKDGTISSSPRKRRRSSIANEEDKNGKTSRQLRKQACRKPANNSLNEDEDDLDPLSDSNRDELEENDDEFEVDYSSNKKRASASSKKKSVAKTAKTSQKRKKANDDSEKTTKEPPKKFSHSTRRRKRCVDKALLEIPEDELDPRTLPIKDIILLAEHRERRAKKEATTSKAFSTNQSGGDSLHEAGANNEEETLGSEDGRDTGDDQASESIPFASSLFNYQSFMDKAPRGKWSKQDTELFYEAIRQFGTDFSMIQQLFPGRTRHQVKLKYKKEERQHPLLLSDAVNNRAKDHYHFKLVIERLQQASTKAEKDPGRDASDFMTGEEVEDLTPGTNEEVATTQQDEIATTQKDKIATTQQDAHVKDQEDCMAFKDDSDDSDDEFQRWSQYKSDY 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi374g00011 963 MobiDBLite consensus disorder prediction 669 688 - -
Gabi374g00011 963 MobiDBLite consensus disorder prediction 948 963 - -
Gabi374g00011 963 MobiDBLite consensus disorder prediction 652 668 - -
Gabi374g00011 963 MobiDBLite consensus disorder prediction 274 295 - -
Gabi374g00011 963 FunFam Predicted protein 803 882 - -
Gabi374g00011 963 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B 17 963 - -
Gabi374g00011 963 MobiDBLite consensus disorder prediction 186 212 - -
Gabi374g00011 963 Gene3D - 803 865 - -
Gabi374g00011 963 SMART sant 799 847 IPR001005 -
Gabi374g00011 963 MobiDBLite consensus disorder prediction 877 963 - -
Gabi374g00011 963 SUPERFAMILY Homeodomain-like 801 849 IPR009057 -
Gabi374g00011 963 MobiDBLite consensus disorder prediction 186 201 - -
Gabi374g00011 963 Pfam Myb DNA-binding like 793 876 IPR039467 -
Gabi374g00011 963 MobiDBLite consensus disorder prediction 43 61 - -
Gabi374g00011 963 MobiDBLite consensus disorder prediction 78 110 - -
Gabi374g00011 963 MobiDBLite consensus disorder prediction 927 941 - -
Gabi374g00011 963 MobiDBLite consensus disorder prediction 904 926 - -
Gabi374g00011 963 MobiDBLite consensus disorder prediction 96 110 - -
Gabi374g00011 963 MobiDBLite consensus disorder prediction 323 347 - -
Gabi374g00011 963 CDD SANT 802 843 IPR001005 -
Gabi374g00011 963 MobiDBLite consensus disorder prediction 739 754 - -
Gabi374g00011 963 MobiDBLite consensus disorder prediction 1 61 - -
Gabi374g00011 963 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 795 851 IPR017930 -
Gabi374g00011 963 MobiDBLite consensus disorder prediction 877 893 - -
Gabi374g00011 963 MobiDBLite consensus disorder prediction 562 713 - -
Gabi374g00011 963 MobiDBLite consensus disorder prediction 699 713 - -
Gabi374g00011 963 MobiDBLite consensus disorder prediction 731 779 - -
Gabi374g00011 963 ProSiteProfiles SANT domain profile. 802 846 IPR017884 -
Gabi374g00011 963 ProSiteProfiles Myb-like domain profile. 795 845 IPR001005 -
Gabi374g00011 963 MobiDBLite consensus disorder prediction 618 642 - -
Gabi374g00011 963 MobiDBLite consensus disorder prediction 28 42 - -
Gabi374g00011 963 MobiDBLite consensus disorder prediction 497 518 - -
Gabi374g00011 963 MobiDBLite consensus disorder prediction 562 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi374g00011 Gabi-Chr374 66728 75200 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi374g00011 Myb_DNA-bind_7 2.7e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi374g00011 K15198 - gmx:100792788 1100.5