Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi374g00009 ATGGATCTTTTTGATGATATTCTACCTGTAGCTCCTCCTGCACGAGCTCGGCCGGGTGGTAAGTTTATCCCTAAGGCCAAACCGAAACAGCTGCCTCGAAAGGAAATATCTGCATCAGAACATGCAACCTCATCTAAAGATGGAAAGAATGTGCCTGTTACTTCATCATCTACCTGCTCAGAAGGAATTTCTTTGAATGAATGTCATAATGCAGTTGCTTCAACTTTAAGTATGTCAGCGGAAGAACATACGAGGTCTAATCATCGTCCACAGGTAGAACATCCAAATTTGGAGGATGCCACAAATTCTGAAATGGGAAATCCTCAACAAGTTAGTGAAAATGGAGATGCTGCAGCTTTAGTTGATGCTCTGCCTTCCACGATGACGGCCTCTGAAGTCGATGCTGATCGGAATCTTACACACTTTCCAAAATCAGCATATCCTGTAGGTTTTGATGTGGGCCGAGTCGCTAACTCCATTCCTGAGTCCAGCCTCAACAACGGCACAACACAATCAGTTCACCCTGCTAATCCTGTAGAAAATGAATTGAGTAGCGTGGCTGCTCCATCTACATCTTGTTCAACCATAGGTAGGATGGAAGATGCACCAAAAACTGGGGAAGATTCATTTCTTGATAACAACAAACATTTGGAACTTATTGATAATTCATTGCAAGTTTGCCCAGATGTGGGCTTCCAAATTGCTTCAGATAATAAGGATGCAATATTTGATAGCAATATTCATTCCAATTTTAGTTTTGCAAGAGAACAAGAGGTAGTGTCTATGGAGTTTGGATTGGATCCTTTCAGTAACACCCTCCCGGATCCTGGCACTAGGAATGCTCGTAAGTTTCAACCCAAGATTAAGCCACGACCCAGAGTAGGCAATACAACAATTATTGCTTCTGCTTCATCTAGTGTTATGATGGAAAAATCTGTTGAGTTGCCTTCATGCACAAATGAAGTTCAACCTTTTCAATCTAGTGGTGATGGCAATGGTGGGCTAAACCAATCCACCAGTTTACCTTTACCCACATCAGAGATTCTTAGTTCAGCCAATTTATCCAATAAGTCTGATTATATGAGCTCAAATATTCCAGTCTCTGAAGACAACAGAAGCTTGACAACAGTAATTCCTTCCCAACTGGATTCCCTGAATGCTATGCTTTCAGAGGTTGCAGTTCATAATGGAAGTAGAGATTCGCCTTCTAGTTTTGGTAAATCAGCTGGAGAGACTGCAGACATTTTCTCTGGGTTGGAAACCCTTGATTACTTTCTCACCCAAAATGCCACTGATACAGGAAAACCAGCTCTTCATTCTTTCAATGAGAAGGGTTCAGAGGAAAATTTTGTTGTTCCAGCTTGTAGTTCTATTAATTCTTTTGGGGCATGTGATACTGCCCAAGTTCAAACGTGTCCAGAGTATCACACCACCCAAGATTCATTAACCTTCAATGAAACTGAAGTCCTCAATGTGAATGATACTCACTCTAACAATAGAAAGCCAGAAACAGAGAATGTTGTGGACCTGAATCCTGCCAGCCCTGTTGACAATGTCTTTGATTATCAATCCATGAAATCTGGCACAGACCCAACTTCTGAAATTCCAGTGCATGAAGAACTGACAAATGCTGCCGATAGTCCCACATTGGCTGATATTCTGCATGCAGATGTTACTGGGGAAAAAGAAGATGCTAATGAGAGAAAAAAAGATGGCACAATTTCAAGTTCTCCAAGGAAGCGTAGAAGATCTTCTATTGCTAATGAAGAGGATAAAAATGGTAAAACCTCAAGGCAGCTGAGGAAACAAGCATGTCGCAAACCTGCCAACAACTCGTTGAATGAGGATGAGGATGACCTTGACCCCCTTTCTGATTCTAATAGAGATGAACTTGAAGAAAATGATGATGAATTTGAAGTGGATTATTCATCCAATAAGAAAAGGGCATCAGCAAGTTCAAAGAAGAAATCTGTTGCTAAAACTGCAAAAACGTCTCAAAAGCGTAAAAAGGCTAATGATGATTCAGAAAAAACTACTAAAGAACCTCCTAAAAAGTTTTCTCATTCAACCAGACGGAGAAAAAGATGTGTGGACAAGGCTCTGCTGGAAATTCCTGAAGATGAACTGGATCCTCGAACATTGCCTATTAAGGATATTATTTTACTTGCAGAACATAGGGAACGGCGGGCGAAAAAGGAGGCAACAACTTCAAAAGCATTTTCCACCAATCAAAGCGGTGGAGATTCCCTTCATGAGGCTGGTGCTAATAATGAAGAGGAGACCTTAGGTTCAGAAGATGGTAGAGACACCGGCGATGATCAAGCCAGTGAGAGTATTCCATTTGCTTCGTCTTTATTCAATTACCAGTCTTTCATGGACAAGGCACCTAGGGGAAAATGGTCAAAACAAGATACTGAACTGTTTTATGAGGCTATTAGGCAGTTTGGCACAGATTTTTCTATGATACAACAGCTTTTTCCTGGTCGAACACGTCATCAGGTTAAGTTGAAGTACAAGAAGGAAGAGCGCCAGCATCCTTTACTGTTATCTGATGCTGTAAATAATCGTGCTAAAGATCACTATCATTTTAAATTGGTGATTGAGCGACTGCAACAAGCTTCCACAAAGGCAGAAAAAGACCCCGGCAGAGATGCTTCAGATTTCATGACTGGGGAGGAGGTTGAGGACTTGACACCTGGAACTAATGAGGAGGTTGCAACAACTCAGCAAGACGAGATTGCGACAACTCAGAAAGACAAGATTGCGACAACTCAGCAGGACGCCCATGTCAAAGATCAGGAAGATTGTATGGCTTTCAAAGATGATAGTGATGATAGTGATGATGAATTTCAAAGATGGTCTCAGTATAAAAGTGATTATTAA 2883 0.4131 MDLFDDILPVAPPARARPGGKFIPKAKPKQLPRKEISASEHATSSKDGKNVPVTSSSTCSEGISLNECHNAVASTLSMSAEEHTRSNHRPQVEHPNLEDATNSEMGNPQQVSENGDAAALVDALPSTMTASEVDADRNLTHFPKSAYPVGFDVGRVANSIPESSLNNGTTQSVHPANPVENELSSVAAPSTSCSTIGRMEDAPKTGEDSFLDNNKHLELIDNSLQVCPDVGFQIASDNKDAIFDSNIHSNFSFAREQEVVSMEFGLDPFSNTLPDPGTRNARKFQPKIKPRPRVGNTTIIASASSSVMMEKSVELPSCTNEVQPFQSSGDGNGGLNQSTSLPLPTSEILSSANLSNKSDYMSSNIPVSEDNRSLTTVIPSQLDSLNAMLSEVAVHNGSRDSPSSFGKSAGETADIFSGLETLDYFLTQNATDTGKPALHSFNEKGSEENFVVPACSSINSFGACDTAQVQTCPEYHTTQDSLTFNETEVLNVNDTHSNNRKPETENVVDLNPASPVDNVFDYQSMKSGTDPTSEIPVHEELTNAADSPTLADILHADVTGEKEDANERKKDGTISSSPRKRRRSSIANEEDKNGKTSRQLRKQACRKPANNSLNEDEDDLDPLSDSNRDELEENDDEFEVDYSSNKKRASASSKKKSVAKTAKTSQKRKKANDDSEKTTKEPPKKFSHSTRRRKRCVDKALLEIPEDELDPRTLPIKDIILLAEHRERRAKKEATTSKAFSTNQSGGDSLHEAGANNEEETLGSEDGRDTGDDQASESIPFASSLFNYQSFMDKAPRGKWSKQDTELFYEAIRQFGTDFSMIQQLFPGRTRHQVKLKYKKEERQHPLLLSDAVNNRAKDHYHFKLVIERLQQASTKAEKDPGRDASDFMTGEEVEDLTPGTNEEVATTQQDEIATTQKDKIATTQQDAHVKDQEDCMAFKDDSDDSDDEFQRWSQYKSDY 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi374g00009 960 Pfam Myb DNA-binding like 790 873 IPR039467 -
Gabi374g00009 960 MobiDBLite consensus disorder prediction 320 344 - -
Gabi374g00009 960 MobiDBLite consensus disorder prediction 666 685 - -
Gabi374g00009 960 FunFam Predicted protein 800 879 - -
Gabi374g00009 960 ProSiteProfiles Myb-like domain profile. 792 842 IPR001005 -
Gabi374g00009 960 MobiDBLite consensus disorder prediction 924 938 - -
Gabi374g00009 960 MobiDBLite consensus disorder prediction 901 923 - -
Gabi374g00009 960 MobiDBLite consensus disorder prediction 945 960 - -
Gabi374g00009 960 MobiDBLite consensus disorder prediction 271 292 - -
Gabi374g00009 960 MobiDBLite consensus disorder prediction 43 61 - -
Gabi374g00009 960 MobiDBLite consensus disorder prediction 78 110 - -
Gabi374g00009 960 MobiDBLite consensus disorder prediction 893 960 - -
Gabi374g00009 960 MobiDBLite consensus disorder prediction 96 110 - -
Gabi374g00009 960 SUPERFAMILY Homeodomain-like 798 846 IPR009057 -
Gabi374g00009 960 SMART sant 796 844 IPR001005 -
Gabi374g00009 960 MobiDBLite consensus disorder prediction 559 710 - -
Gabi374g00009 960 MobiDBLite consensus disorder prediction 1 61 - -
Gabi374g00009 960 Gene3D - 800 862 - -
Gabi374g00009 960 MobiDBLite consensus disorder prediction 164 209 - -
Gabi374g00009 960 MobiDBLite consensus disorder prediction 736 751 - -
Gabi374g00009 960 ProSiteProfiles SANT domain profile. 799 843 IPR017884 -
Gabi374g00009 960 MobiDBLite consensus disorder prediction 615 639 - -
Gabi374g00009 960 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B 17 960 - -
Gabi374g00009 960 MobiDBLite consensus disorder prediction 494 515 - -
Gabi374g00009 960 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 792 848 IPR017930 -
Gabi374g00009 960 MobiDBLite consensus disorder prediction 559 598 - -
Gabi374g00009 960 CDD SANT 799 840 IPR001005 -
Gabi374g00009 960 MobiDBLite consensus disorder prediction 696 710 - -
Gabi374g00009 960 MobiDBLite consensus disorder prediction 649 665 - -
Gabi374g00009 960 MobiDBLite consensus disorder prediction 728 776 - -
Gabi374g00009 960 MobiDBLite consensus disorder prediction 28 42 - -
Gabi374g00009 960 MobiDBLite consensus disorder prediction 164 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi374g00009 Gabi-Chr374 66728 75200 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi374g00009 Myb_DNA-bind_7 2.7e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi374g00009 K15198 - gmx:100792788 1092.41