Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi374g00004 ATGATGAGGCTGAAGACATATGCGGGTCTTAGTTTGATTGCAACCCTGGCTATTGCATATCATGCATTTAACAGTAGAGGCCAGTTTTATCCGGCCATGGTGTATCTGTCAACTTCCAAGATCAGTTTGGTGCTTCTTCTCAACATGGGTTTGGTCATTATGTGTATTCTGTGGCAATTAACAAAAAAGGTATTCCTGGGCTCCCTCCGAGAGGCTGAGGTCGAGAGGCTTAATGAGCAATCATGGAGGGAGGTTACGGAAATCCTCTTTGCAATTACTATTTTTAGACAGGACTTCTCTGTTACTTTCCTTGCGATGGTCACAGCACTATTGTTAATCAAGGCTTTGCATTGGTTGGCTCAAAAGAGAGTCGAGTACATCGAGACCACTCCTTCAGTCCCCATGTTGTCCCATATTCGAATTGTATCTTTTATGGGTTTCCTTCTTCTTCTCGATAGCCTTTTCTTATACAGTTCTACGAAGCATTTGATAGAAACGTGGCAGGCTTCAGTTTCACTATTCTTTTCTTTCGAGTACATGATACTGGCGACAACCACGGTTTCAATTTTCATAAAATATATTTTCTATGTCAGTGACATGCTTATGGAAGGACAATGGGAAAGGAAACCGGTCTTCACATTTTACCTTGAACTTATTAGGGACTTGCTTCACTTGTCTATGTATCTGTGCTTCTTTCTTGTAATTTTCGTAAACTATGGTATTCCCTTGCACCTAATACGGGAGCTGTATGAGACATTTAGGAACTTCAAAGTTCGTGTTGCGGATTACATACGATATCGTAAGATCACTTCAAATATGAATGGTCGATTTCCAGATGCAACCCCTGAAGAGCTTAATGCAAGTGATGCAACCTGCATTATCTGTCGTGAAGAGATGACTACAGCCAAGAAACTTTTATGTGGACATCTTTTTCATGTTCATTGCCTCCGATCATGGCTGGAGCGGCAGCATACTTGCCCTACCTGCAGAGCCTTGGTTGTACAACCAGAAAATGGGACAACTGCTGCTGGAGGGCAGCAAGGATCACAGTCAGATGGTCATAGACAGGGAATTGGAAGCACAGCTCAGACTGAGGATGGCAGTGGGGTGGCAACTGATAGTTTGAGTCGGCATCAAGCCAGACTCCAAGCGGCTGCAGCTGCAGCTTCAATTTATGAGAAGTCTTATGTTTACCCCTCTGCAACTTCTTTAGTATGTTCTCCCGGGTACACTTTTTATCCCCCGGTTCAAATACCTATGGCTGAAACTACTAATTCTGAGCTTAATGGAGAACAAGCTTCACGTGAACAGGCACAAAATCAGTTTCTTATCCCTGGTGGACCGTCAAATGTATCCTTTCCTCCAATGGGACACTTCCATTTTCTACCTTCCCAACCACATGCAGCCCCGGTGAATTATGGAGAGGAGTTTGGAAATGATCCAAACATCCTAAGATCTCCGCTGGAAGCTCAAAGAAAATTTCTTCAATACCAGATTGAGATTCTGCAAAATCAGCTCCAGATTCTGCAGAGGACGAAGACTGAAAAAAGTATGGATGACGGTACATCATCATCAGATAGCAGAGGCAAGCTTATACTTTCCTCGTCATCTGTATCTGGTCAAGACGGAAAAGCATAA 1638 0.4322 MMRLKTYAGLSLIATLAIAYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCILWQLTKKVFLGSLREAEVERLNEQSWREVTEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHIRIVSFMGFLLLLDSLFLYSSTKHLIETWQASVSLFFSFEYMILATTTVSIFIKYIFYVSDMLMEGQWERKPVFTFYLELIRDLLHLSMYLCFFLVIFVNYGIPLHLIRELYETFRNFKVRVADYIRYRKITSNMNGRFPDATPEELNASDATCIICREEMTTAKKLLCGHLFHVHCLRSWLERQHTCPTCRALVVQPENGTTAAGGQQGSQSDGHRQGIGSTAQTEDGSGVATDSLSRHQARLQAAAAAASIYEKSYVYPSATSLVCSPGYTFYPPVQIPMAETTNSELNGEQASREQAQNQFLIPGGPSNVSFPPMGHFHFLPSQPHAAPVNYGEEFGNDPNILRSPLEAQRKFLQYQIEILQNQLQILQRTKTEKSMDDGTSSSDSRGKLILSSSSVSGQDGKA 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi374g00004 545 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
Gabi374g00004 545 MobiDBLite consensus disorder prediction 524 545 - -
Gabi374g00004 545 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Gabi374g00004 545 SUPERFAMILY RING/U-box 272 336 - -
Gabi374g00004 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 339 IPR013083 -
Gabi374g00004 545 PANTHER RING ZINC FINGER PROTEIN 1 524 - -
Gabi374g00004 545 Pfam Ring finger domain 291 330 IPR001841 -
Gabi374g00004 545 Coils Coil 492 519 - -
Gabi374g00004 545 Coils Coil 421 441 - -
Gabi374g00004 545 SMART ring_2 292 329 IPR001841 -
Gabi374g00004 545 MobiDBLite consensus disorder prediction 340 375 - -
Gabi374g00004 545 MobiDBLite consensus disorder prediction 512 545 - -
Gabi374g00004 545 CDD RING-H2_synoviolin 289 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi374g00004 Gabi-Chr374 27239 32885 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi374g00004 1 527 C3H Transcription Factor Family AT3G16090 64.981 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi374g00004 K10601 - gmx:100816441 883.634