Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3749g00029 ATGGCCGGAGATGATGTTGTCGTGAAGATTGATGAGGGAGAACCCGCTCAGGGAAGCAAGATTTGGAGGGAGTCCAGCTATGATTTCTGGCAGAAGGACGGCACCGCCGGTGACAATGCTCGCGATGAGAGTTTTGATTTCCGGCAAAAGGGTCAGACGGAGGACCCGCCGTCGAAGCTGATTCGAAAGTTTTTACACAAGCAGCAGGCTTCCGGCGATATGTCGCTGGACATGGATTTGGAAATGGAGGAGCTCCAGAACGACGGCGAAGGAGACGGCGACGGCGACGGTGACGGCGAGGAGAAGTTGACGCCGGTGGAGGAGTCTCCGATGACCTACCGGATGTCGAAGGAGCTCAAGGTCTCGTTCGAGGAACCCGCTTCCAATGTGGTCGAGGTGGCGAACGATACTCCTGTTAGAAGAAGGCACAGCAAGGACTCGCCGTCGCTCGGAGATTTTCAAAGGCCTCCGCAACCGCCGCATCACGACCGTCGTCGGTCTCCGTCTCCGGCTCATAATGGTGATGCCGAGGTTTTGACGTGTACCTCGAACGCTTCATTTGAAAGGAACCTTTCGATGCAGAGGAAGTCCATTTTGTTGAAGACCAAAACCAGGTCCAGATTGATGGACCCGCCTGAGGAACCCGACAGGAGATCGGGTCGGGTCCCTAAATCCGGTCAGCTTTTTTCCGGGTTTCTGGGTGGTAAAAAGGGTGATGATGAGGAAGATGATCCGTTTTTGGAAGATGATATTCCTGATGAGTATAAGAAGACCCATTTTAGCTTCTGGATTCTGCTTGAGTGGTTGAGTTTGATTTTGATCATTGGTGCACTGATAACCACGCTCAGTGTTTCAATTCTGAGGGACAAGAATCTCTGGCAGCTTAAGTTGTGGAAATGGGAGGTGATGATTCTGGTTCTTATTTGTGGTCGGTTGGTTTCTGATTGGGTGATAAGGATTGCTGTGTTCTGCATTGAAAGGAATTTCCTTTTGAGGAAGAGGGTGCTCTATTTTGTGTATGGTGTGAAGAAAGCAGTTCAAAATTGTCTATGGTTGGGCCTTGTTTTGATTGCTTGGCATTTTTTGTTTGATAAGAGAGTTCAGAGGGAGACTAACAGTGATTTCCTGCAATATGTCACTAAGGTCTTGGTCTGTTTCTTGATTGGTACTTTGGTGTGGTTGCTGAAAACTCTTGCGGTTAAGGTTCTGGCTTCTTCATTCCATGTAAGCACCTACTTTGATAGGATTCAAGAGTCACTGTTTAATCAATTTGTAATTGAAACACTTTCGGGGCCACCTTCGATAGAACTTCAAAAGGCTGAAGAAGAGGAGGAAAGGCTTGCTGATGAGGTTCAGAAGCTGCAGAATGCTGGGAGTGGGAGGTTGAGGAGTGGAATGCTCCCGAAAAGCCCCAGAGCAAAGAGTAGCAAGTTTTCACGGCCACTTTCCAAGAAGTCAGATGATGGGAATGGGATAAGTATTGATGACCTGCATAAGCTGAATCCAAATAATGTCTCTGCCTGGAATATGAAAAGGTTAATGAATATGGTCCGGCATGGCGCCCTTTCTACATTGGATGAACAGATACTTGACTCAACTAATGATGATGAGAATGCCACGCAAATTAGAAGTGAAAATGAGGCTAAAGCAGCAGCAAAGAAAATATTTCAAAATGTTGCTAGGCGCGGCTGCAGGTATATTTTCCCGGAGGACTTGATGCGTTTTATGCGAGAAGATGAAGCTGCAAAAACCATGAATCTCTTTGAAGGAGCTTCTGATTCTGGGAAAATCAGCAAATCAGCCTTGAAGAACTGGGTGGTCAATGCATTCAGGGAGAGGAGAGCACTTGCTTTGACATTGAATGACACTAAAACGGCAGTGAACAAACTTCATCGAATGCTCAATATTTTAGTTGCCATTATTATACTGGTTATTTGGCTCTTGATATTGGAAATTGCCACCACCAAATTTCTTCTCTTTGTGAGCTCACAGCTTGTCTTGGTTGCATTTATATTTGGAAACACCTGCAAGACCGTATTTGAAGCAATTGTTTTCTTATTTGTCATGCACCCATTTGATGTGGGAGATAGATGCGAAATTGACGGGGTCCAGATGGTTGTAGAAGAAATGAACATATTGACAACCATATTTCTAAGATTCGATAATCAAAAGATTATGATACCTAACAGTGTCCTCGCTACTAAGGCCATATATAATTTCTACCGGAGTCCTGACATGGGAGATGCTATCGAATTCTGTATACATGTATCTACCCCAGTTGAAAAGATTTCACTCATGAAACACAAAATACAGAGTTACATTGATAACAAGAAGGAGCATTGGTATCCTTCACCTTTTATAGTCTTCAAGGATCATGACCAATTAAACATGGTGAGAATGGCGATTTGGCCAACTCATAGAATGAACTTCCAAGACATGGGAGAAAGATTTGTGAGGAGATCCCTTTTGATTGAAGAGATGATCAAGATTTTCCGGGAGATTGACATGAATTACCGTCTCATGCCACTTGACATTAACGTTAGAGGTGTTCCTACCACTTCTGACCGGCTTCCACCTAGTTGGACTACTGTCCCAAATTGA 2601 0.4494 MAGDDVVVKIDEGEPAQGSKIWRESSYDFWQKDGTAGDNARDESFDFRQKGQTEDPPSKLIRKFLHKQQASGDMSLDMDLEMEELQNDGEGDGDGDGDGEEKLTPVEESPMTYRMSKELKVSFEEPASNVVEVANDTPVRRRHSKDSPSLGDFQRPPQPPHHDRRRSPSPAHNGDAEVLTCTSNASFERNLSMQRKSILLKTKTRSRLMDPPEEPDRRSGRVPKSGQLFSGFLGGKKGDDEEDDPFLEDDIPDEYKKTHFSFWILLEWLSLILIIGALITTLSVSILRDKNLWQLKLWKWEVMILVLICGRLVSDWVIRIAVFCIERNFLLRKRVLYFVYGVKKAVQNCLWLGLVLIAWHFLFDKRVQRETNSDFLQYVTKVLVCFLIGTLVWLLKTLAVKVLASSFHVSTYFDRIQESLFNQFVIETLSGPPSIELQKAEEEEERLADEVQKLQNAGSGRLRSGMLPKSPRAKSSKFSRPLSKKSDDGNGISIDDLHKLNPNNVSAWNMKRLMNMVRHGALSTLDEQILDSTNDDENATQIRSENEAKAAAKKIFQNVARRGCRYIFPEDLMRFMREDEAAKTMNLFEGASDSGKISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNILVAIIILVIWLLILEIATTKFLLFVSSQLVLVAFIFGNTCKTVFEAIVFLFVMHPFDVGDRCEIDGVQMVVEEMNILTTIFLRFDNQKIMIPNSVLATKAIYNFYRSPDMGDAIEFCIHVSTPVEKISLMKHKIQSYIDNKKEHWYPSPFIVFKDHDQLNMVRMAIWPTHRMNFQDMGERFVRRSLLIEEMIKIFREIDMNYRLMPLDINVRGVPTTSDRLPPSWTTVPN 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3749g00029 866 MobiDBLite consensus disorder prediction 480 494 - -
Gabi3749g00029 866 MobiDBLite consensus disorder prediction 459 495 - -
Gabi3749g00029 866 MobiDBLite consensus disorder prediction 157 171 - -
Gabi3749g00029 866 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 81 861 IPR016688 -
Gabi3749g00029 866 Gene3D - 691 740 IPR023408 -
Gabi3749g00029 866 MobiDBLite consensus disorder prediction 35 62 - -
Gabi3749g00029 866 Pfam Mechanosensitive ion channel 633 833 IPR006685 GO:0016020|GO:0055085
Gabi3749g00029 866 MobiDBLite consensus disorder prediction 202 241 - -
Gabi3749g00029 866 Coils Coil 437 457 - -
Gabi3749g00029 866 MobiDBLite consensus disorder prediction 206 221 - -
Gabi3749g00029 866 MobiDBLite consensus disorder prediction 77 97 - -
Gabi3749g00029 866 FunFam Predicted mechanosensitive ion channel 691 740 - -
Gabi3749g00029 866 MobiDBLite consensus disorder prediction 1 176 - -
Gabi3749g00029 866 PIRSF Memb_At2g17000 5 866 IPR016688 -
Gabi3749g00029 866 SUPERFAMILY Sm-like ribonucleoproteins 681 740 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3749g00029 Gabi-Chr3749 346241 350452 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3749g00029 5 863 Mechanosensitive Ion Channel Family AT1G78610 57.726 0.0 950
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3749g00029 K22048 - gmx:102665658 1344.72