Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3749g00028 ATGCAATCTATAAAGAAAACTTTGAAATCTTATGGTTCTTACAACAAATACTCCAGAAGGTTTTCCGTAAACGGAAACCCAGATTCCGAGCACGAGCAGCTTCCAATCCTCCGAGATCAAGAAACCCGCCACCCTTATCTGATGGCCGGAGATGATGTTGTCGTGAAGATTGATGAGGGAGAACCCGCTCAGGGAAGCAAGATTTGGAGGGAGTCCAGCTATGATTTCTGGCAGAAGGACGGCACCGCCGGTGACAATGCTCGCGATGAGAGTTTTGATTTCCGGCAAAAGGGTCAGACGGAGGACCCGCCGTCGAAGCTGATTCGAAAGTTTTTACACAAGCAGCAGGCTTCCGGCGATATGTCGCTGGACATGGATTTGGAAATGGAGGAGCTCCAGAACGACGGCGAAGGAGACGGCGACGGCGACGGTGACGGCGAGGAGAAGTTGACGCCGGTGGAGGAGTCTCCGATGACCTACCGGATGTCGAAGGAGCTCAAGGTCTCGTTCGAGGAACCCGCTTCCAATGTGGTCGAGGTGGCGAACGATACTCCTGTTAGAAGAAGGCACAGCAAGGACTCGCCGTCGCTCGGAGATTTTCAAAGGCCTCCGCAACCGCCGCATCACGACCGTCGTCGGTCTCCGTCTCCGGCTCATAATGGTGATGCCGAGGTTTTGACGTGTACCTCGAACGCTTCATTTGAAAGGAACCTTTCGATGCAGAGGAAGTCCATTTTGTTGAAGACCAAAACCAGGTCCAGATTGATGGACCCGCCTGAGGAACCCGACAGGAGATCGGGTCGGGTCCCTAAATCCGGTCAGCTTTTTTCCGGGTTTCTGGGTGGTAAAAAGGGTGATGATGAGGAAGATGATCCGTTTTTGGAAGATGATATTCCTGATGAGTATAAGAAGACCCATTTTAGCTTCTGGATTCTGCTTGAGTGGTTGAGTTTGATTTTGATCATTGGTGCACTGATAACCACGCTCAGTGTTTCAATTCTGAGGGACAAGAATCTCTGGCAGCTTAAGTTGTGGAAATGGGAGGTGATGATTCTGGTTCTTATTTGTGGTCGGTTGGTTTCTGATTGGGTGATAAGGATTGCTGTGTTCTGCATTGAAAGGAATTTCCTTTTGAGGAAGAGGGTGCTCTATTTTGTGTATGGTGTGAAGAAAGCAGTTCAAAATTGTCTATGGTTGGGCCTTGTTTTGATTGCTTGGCATTTTTTGTTTGATAAGAGAGTTCAGAGGGAGACTAACAGTGATTTCCTGCAATATGTCACTAAGGTCTTGGTCTGTTTCTTGATTGGTACTTTGGTGTGGTTGCTGAAAACTCTTGCGGTTAAGGTTCTGGCTTCTTCATTCCATGTAAGCACCTACTTTGATAGGATTCAAGAGTCACTGTTTAATCAATTTGTAATTGAAACACTTTCGGGGCCACCTTCGATAGAACTTCAAAAGGCTGAAGAAGAGGAGGAAAGGCTTGCTGATGAGGTTCAGAAGCTGCAGAATGCTGGGGTTACCATACCCCCTGACCTTAGAGCAACTGCCTTCCCTACTCTCAAGAGTGGGAGGTTGAGGAGTGGAATGCTCCCGAAAAGCCCCAGAGCAAAGAGTAGCAAGTTTTCACGGCCACTTTCCAAGAAGTCAGATGATGGGAATGGGATAAGTATTGATGACCTGCATAAGCTGAATCCAAATAATGTCTCTGCCTGGAATATGAAAAGGTTAATGAATATGGTCCGGCATGGCGCCCTTTCTACATTGGATGAACAGATACTTGACTCAACTAATGATGATGAGAATGCCACGCAAATTAGAAGTGAAAATGAGGCTAAAGCAGCAGCAAAGAAAATATTTCAAAATGTTGCTAGGCGCGGCTGCAGGTATATTTTCCCGGAGGACTTGATGCGTTTTATGCGAGAAGATGAAGCTGCAAAAACCATGAATCTCTTTGAAGGAGCTTCTGATTCTGGGAAAATCAGCAAATCAGCCTTGAAGAACTGGGTGGTCAATGCATTCAGGGAGAGGAGAGCACTTGCTTTGACATTGAATGACACTAAAACGGCAGTGAACAAACTTCATCGAATGCTCAATATTTTAGTTGCCATTATTATACTGGTTATTTGGCTCTTGATATTGGAAATTGCCACCACCAAATTTCTTCTCTTTGTGAGCTCACAGCTTGTCTTGGTTGCATTTATATTTGGAAACACCTGCAAGACCGTATTTGAAGCAATTGTTTTCTTATTTGTCATGCACCCATTTGATGTGGGAGATAGATGCGAAATTGACGGGGTCCAGATGGTTGTAGAAGAAATGAACATATTGACAACCATATTTCTAAGATTCGATAATCAAAAGATTATGATACCTAACAGTGTCCTCGCTACTAAGGCCATATATAATTTCTACCGGAGTCCTGACATGGGAGATGCTATCGAATTCTGTATACATGTATCTACCCCAGTTGAAAAGATTTCACTCATGAAACACAAAATACAGAGTTACATTGATAACAAGAAGGAGCATTGGTATCCTTCACCTTTTATAGTCTTCAAGGATCATGACCAATTAAACATGGTGAGAATGGCGATTTGGCCAACTCATAGAATGAACTTCCAAGACATGGGAGAAAGATTTGTGAGGAGATCCCTTTTGATTGAAGAGATGATCAAGATTTTCCGGGAGATTGACATGAATTACCGTCTCATGCCACTTGACATTAACGTTAGAGGTGTTCCTACCACTTCTGACCGGCTTCCACCTAGTTGGACTACTGTCCCAAATTGA 2790 0.4495 MQSIKKTLKSYGSYNKYSRRFSVNGNPDSEHEQLPILRDQETRHPYLMAGDDVVVKIDEGEPAQGSKIWRESSYDFWQKDGTAGDNARDESFDFRQKGQTEDPPSKLIRKFLHKQQASGDMSLDMDLEMEELQNDGEGDGDGDGDGEEKLTPVEESPMTYRMSKELKVSFEEPASNVVEVANDTPVRRRHSKDSPSLGDFQRPPQPPHHDRRRSPSPAHNGDAEVLTCTSNASFERNLSMQRKSILLKTKTRSRLMDPPEEPDRRSGRVPKSGQLFSGFLGGKKGDDEEDDPFLEDDIPDEYKKTHFSFWILLEWLSLILIIGALITTLSVSILRDKNLWQLKLWKWEVMILVLICGRLVSDWVIRIAVFCIERNFLLRKRVLYFVYGVKKAVQNCLWLGLVLIAWHFLFDKRVQRETNSDFLQYVTKVLVCFLIGTLVWLLKTLAVKVLASSFHVSTYFDRIQESLFNQFVIETLSGPPSIELQKAEEEEERLADEVQKLQNAGVTIPPDLRATAFPTLKSGRLRSGMLPKSPRAKSSKFSRPLSKKSDDGNGISIDDLHKLNPNNVSAWNMKRLMNMVRHGALSTLDEQILDSTNDDENATQIRSENEAKAAAKKIFQNVARRGCRYIFPEDLMRFMREDEAAKTMNLFEGASDSGKISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNILVAIIILVIWLLILEIATTKFLLFVSSQLVLVAFIFGNTCKTVFEAIVFLFVMHPFDVGDRCEIDGVQMVVEEMNILTTIFLRFDNQKIMIPNSVLATKAIYNFYRSPDMGDAIEFCIHVSTPVEKISLMKHKIQSYIDNKKEHWYPSPFIVFKDHDQLNMVRMAIWPTHRMNFQDMGERFVRRSLLIEEMIKIFREIDMNYRLMPLDINVRGVPTTSDRLPPSWTTVPN 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3749g00028 929 MobiDBLite consensus disorder prediction 179 223 - -
Gabi3749g00028 929 SUPERFAMILY Sm-like ribonucleoproteins 744 803 IPR010920 -
Gabi3749g00028 929 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 110 924 IPR016688 -
Gabi3749g00028 929 PIRSF Memb_At2g17000 39 929 IPR016688 -
Gabi3749g00028 929 MobiDBLite consensus disorder prediction 543 557 - -
Gabi3749g00028 929 Pfam Mechanosensitive ion channel 696 895 IPR006685 GO:0016020|GO:0055085
Gabi3749g00028 929 MobiDBLite consensus disorder prediction 524 558 - -
Gabi3749g00028 929 MobiDBLite consensus disorder prediction 133 160 - -
Gabi3749g00028 929 MobiDBLite consensus disorder prediction 249 288 - -
Gabi3749g00028 929 MobiDBLite consensus disorder prediction 204 218 - -
Gabi3749g00028 929 FunFam Predicted mechanosensitive ion channel 754 803 - -
Gabi3749g00028 929 Coils Coil 484 504 - -
Gabi3749g00028 929 MobiDBLite consensus disorder prediction 253 268 - -
Gabi3749g00028 929 Gene3D - 754 803 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3749g00028 Gabi-Chr3749 346170 350452 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3749g00028 52 926 Mechanosensitive Ion Channel Family AT1G78610 56.739 0.0 943
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3749g00028 K22048 - gmx:102665658 1433.31