Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3749g00027 ATGGTGAAGGTGGTGATGGAGGACAACGAGAGCCACGGCAGCGGAGTGCAGCACCATTCGTCGTCGCCGGCGCAAAACCGGCAACAGCGGCAGAAAGTGGAAGTGTACAATGAGATTCTTCGCCGGCTTAAGGATTCCGGCAACGAAGAGGCTATGCAGCCAGGCTTCAACGATCAGCTTTGGGCTCACTTCAACCGCCTTCCTACACGGTATGCACTTGATGTGAATGTGGAAAGGGCGGCAGATGTTCTTATGCACAAGAGATTACTTCGTTTGGCACATGATCCTGCTAATAGGCCTTCAATTGAAGTTCGCTTAGTTCAGGTTCATCCCATATCTGACGGAAACTCAGCTGATTCTTTCCAATCAGCTACTCCTGAGATAGAATCTGGTCAAAGCTCTTCAAAGTACTCAAGCAGACAGAGTATACATCCACCTCCTGCTTTTGGTTCTTCTCCTAATCTTGAAGCACTAGCTCTCGACGCAAGTAATTCTGAAGGCATAAAGGAGGAACAATCTGTGCATGCCAATGTACAATATTCACGGCCTATGCATGAAATCACCTTCTCAACAGATGACAAGCCAAAGCTTCTCAGTCAGTTAACAGCTTTACTTGCTGAGATTGGACTGAACATCCAAGAGGCGCATGCCTTTTCCACAACTGATGGTTACTCATTAGATGTGTTTGTTGTCGAAGGATGGCCCTACGAGGAAACGGAGAAGCTTAAAGCAACTTTGGAAAAAGAAGTATCGAAGATTGAGAGGCAGGTGACGTCTGGTCAGCAATCAGCATCTTCTGTCGAGAAGCTTGATCAAGCAGTGGTCAAATGTGAACCAGATCATTTGACAATACCTAATGACGGGATAGATGTTTGGGAAATAGACCCTAAACATTTGAAATATGGAACTCAAATTGCATCTGGATCATATGGTGAACTATTTAAAGGTGTATATTGTAGCCAGGAAGTAGCCATCAAAGTTCTCAAGGCTGAGCATGTAAATTCAGAATTGCAGAGAGAGTTCGCGCAGGAAGTCTATATCATGAGAAAGGTTCGACACAAGAATGTTGTACAATTCATTGGAGCATGTACCAAGCCCCCACGCCTATGCATAGTAACAGAGTTTATGTCTGGTGGAAGTGTGTATGACTACCTACATAAGCAGAAGGGTTCTTTTAAATTTCCTACCCTGCTCAAAGTTGCAATTGATGTTGCTAAAGGAATGAACTACTTGCACCAACACAACATAATCCACAGAGACCTGAAGGCTGCCAATCTTTTGATGGATGAAAATTGTATTGTAAAGGTCGCTGATTTTGGGGTTGCTAGAGTGAAAGCACAATCTGGAGTTATGACAGCAGAAACGGGAACATATCGATGGATGGCTCCTGAGGTTATAGAACACAAGCCGTATGATCACAAGGCTGATGTATTTAGTTTTGGAATTGTTTTATGGGAGTTGCTCACTGGAAAGCTTCCATACGAATATTTGACTCCTCTACAAGCAGCTATAGGAGTGGTTCAAAAGGGTCTACGACCCACCATCCCCAAGAACAGCCATCCAAAGTTTGTTGAGCTTCTTGAGAGGTCTTGGCAGCAAGATCCAACATTGAGACCTGATTTCTCTGAAATTATCGAGATCTTGCAGCAGTTAGCTAAAGAGGTTGGAGATGAAGGAGAGGAGCGGCGCAGGGATAAATGGGGAGGGTTTCTGTCTGTCCTCAGACAAGGTCATCATCACTAA 1743 0.4464 MVKVVMEDNESHGSGVQHHSSSPAQNRQQRQKVEVYNEILRRLKDSGNEEAMQPGFNDQLWAHFNRLPTRYALDVNVERAADVLMHKRLLRLAHDPANRPSIEVRLVQVHPISDGNSADSFQSATPEIESGQSSSKYSSRQSIHPPPAFGSSPNLEALALDASNSEGIKEEQSVHANVQYSRPMHEITFSTDDKPKLLSQLTALLAEIGLNIQEAHAFSTTDGYSLDVFVVEGWPYEETEKLKATLEKEVSKIERQVTSGQQSASSVEKLDQAVVKCEPDHLTIPNDGIDVWEIDPKHLKYGTQIASGSYGELFKGVYCSQEVAIKVLKAEHVNSELQREFAQEVYIMRKVRHKNVVQFIGACTKPPRLCIVTEFMSGGSVYDYLHKQKGSFKFPTLLKVAIDVAKGMNYLHQHNIIHRDLKAANLLMDENCIVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEYLTPLQAAIGVVQKGLRPTIPKNSHPKFVELLERSWQQDPTLRPDFSEIIEILQQLAKEVGDEGEERRRDKWGGFLSVLRQGHHH 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3749g00027 580 FunFam Serine/threonine-protein kinase isoform 1 289 377 - -
Gabi3749g00027 580 ProSiteProfiles ACT domain profile. 186 265 IPR002912 -
Gabi3749g00027 580 MobiDBLite consensus disorder prediction 15 31 - -
Gabi3749g00027 580 PRINTS Tyrosine kinase catalytic domain signature 456 466 IPR001245 GO:0004672|GO:0006468
Gabi3749g00027 580 PRINTS Tyrosine kinase catalytic domain signature 373 386 IPR001245 GO:0004672|GO:0006468
Gabi3749g00027 580 PRINTS Tyrosine kinase catalytic domain signature 475 497 IPR001245 GO:0004672|GO:0006468
Gabi3749g00027 580 PRINTS Tyrosine kinase catalytic domain signature 410 428 IPR001245 GO:0004672|GO:0006468
Gabi3749g00027 580 PRINTS Tyrosine kinase catalytic domain signature 519 541 IPR001245 GO:0004672|GO:0006468
Gabi3749g00027 580 Gene3D Transferase(Phosphotransferase) domain 1 378 567 - -
Gabi3749g00027 580 CDD STKc_MAP3K-like 305 548 - -
Gabi3749g00027 580 Coils Coil 26 46 - -
Gabi3749g00027 580 FunFam serine/threonine-protein kinase HT1 378 567 - -
Gabi3749g00027 580 MobiDBLite consensus disorder prediction 114 148 - -
Gabi3749g00027 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Gabi3749g00027 580 MobiDBLite consensus disorder prediction 1 31 - -
Gabi3749g00027 580 Coils Coil 236 256 - -
Gabi3749g00027 580 Gene3D Phosphorylase Kinase; domain 1 288 377 - -
Gabi3749g00027 580 Pfam Protein tyrosine and serine/threonine kinase 299 548 IPR001245 GO:0004672|GO:0006468
Gabi3749g00027 580 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 99 555 - -
Gabi3749g00027 580 SMART serkin_6 299 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3749g00027 580 CDD ACT_TyrKc 184 250 - -
Gabi3749g00027 580 SUPERFAMILY Protein kinase-like (PK-like) 284 548 IPR011009 -
Gabi3749g00027 580 SUPERFAMILY ACT-like 184 256 IPR045865 -
Gabi3749g00027 580 ProSiteProfiles Protein kinase domain profile. 299 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3749g00027 580 MobiDBLite consensus disorder prediction 114 154 - -
Gabi3749g00027 580 Gene3D - 184 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3749g00027 Gabi-Chr3749 319553 331231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3749g00027 7 578 MAP Kinase Kinase Kinase AT4G35780 65.385 0.0 752
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gabi3749g00027 PK_Tyr_Ser-Thr 3.7e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3749g00027 - - gmx:100805180 1006.13